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Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 2, 页码: 341-351
Authors:  Jin,Gui-Hua;  Zhou,Yan-Li;  Yang,Hong;  Hu,Yan-Ting;  Shi,Yong;  Li,Ling;  Siddique,Abu N.;  Liu,Chang-Ning;  Zhu,An-Dan;  Zhang,Cheng-Jun;  Li,De-Zhu
Favorite  |  View/Download:16/0  |  Submit date:2022/04/02
comparative genomics  origin  orphan gene  transposable element  LINEAGE-SPECIFIC GENES  EVOLUTION  ORIGIN  IDENTIFICATION  EMERGENCE  PROTEIN  DUPLICATION  ALIGNMENT  SETS  
Plastid phylogenomic insights into relationships of all flowering plant families 期刊论文
BMC BIOLOGY, 2021, 卷号: 19, 期号: 1, 页码: 232
Authors:  Li,Hong-Tao;  Luo,Yang;  Gan,Lu;  Ma,Peng-Fei;  Gao,Lian-Ming;  Yang,Jun-Bo;  Cai,Jie;  Gitzendanner,Matthew A.;  Fritsch,Peter W.;  Zhang,Ting;  Jin,Jian-Jun;  Zeng,Chun-Xia;  Wang,Hong;  Yu,Wen-Bin;  Zhang,Rong;  van der Bank,Michelle;  Olmstead,Richard G.;  Hollingsworth,Peter M.;  Chase,Mark W.;  Soltis,Douglas E.;  Soltis,Pamela S.;  Yi,Ting-Shuang;  Li,De-Zhu
Favorite  |  View/Download:21/0  |  Submit date:2022/04/02
Mesangiospermae  Tree of life  Interfamilial relationships  Plastome  PPA II  MULTIPLE SEQUENCE ALIGNMENT  EARLY DIVERSIFICATION  CHLOROPLAST GENOME  SEED PLANTS  SCALE DATA  ANGIOSPERMS  GENES  PHYLOGENETICS  RBCL  RESOLVES  
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms 期刊论文
NATURE PLANTS, 2021, 卷号: 7, 期号: 8, 页码: 1015+
Authors:  Stull,Gregory W.;  Qu,Xiao-Jian;  Parins-Fukuchi,Caroline;  Yang,Ying-Ying;  Yang,Jun-Bo;  Yang,Zhi-Yun;  Hu,Yi;  Ma,Hong;  Soltis,Pamela S.;  Soltis,Douglas E.;  Li,De-Zhu;  Smith,Stephen A.;  Yi,Ting-Shuang
Favorite  |  View/Download:8/0  |  Submit date:2022/04/02
SEED PLANTS  R PACKAGE  POLYPLOIDY  CONIFERS  TREE  GENERATION  INFERENCE  ANCIENT  DISCORDANCE  ANGIOSPERMS  
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes 期刊论文
GENOME BIOLOGY, 2020
Authors:  Jin, Jian-Jun;  Yu, Wen-Bin;  Yang, Jun-Bo;  Song, Yu;  dePamphilis, Claude W.;  Yi, Ting-Shuang;  Li, De-Zhu
View  |  Adobe PDF(1951Kb)  |  Favorite  |  View/Download:52/8  |  Submit date:2021/01/05
Born migrators: Historical biogeography of the cosmopolitan family Cannabaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 页码: 13
Authors:  Jin, Jian-Jun;  Yang, Mei-Qing;  Fritsch, Peter W.;  van Velzen, Robin;  Li, De-Zhu;  Yi, Ting-Shuang
View  |  Adobe PDF(484Kb)  |  Favorite  |  View/Download:78/14  |  Submit date:2020/03/18
ancestral geographical range analysis  Cannabaceae  dispersal  molecular dating  Northern Hemisphere  phylogeny  
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 页码: 11
Authors:  Jin, Gui-Hua;  Zhou, Yan-Li;  Yang, Hong;  Hu, Yan-Ting;  Shi, Yong;  Li, Ling;  Siddique, Abu N.;  Liu, Chang-Ning;  Zhu, An-Dan;  Zhang, Cheng-Jun;  Li, De-Zhu
View  |  Adobe PDF(845Kb)  |  Favorite  |  View/Download:188/95  |  Submit date:2020/03/17
comparative genomics  origin  orphan gene  transposable element  
Origin of angiosperms and the puzzle of the Jurassic gap 期刊论文
NATURE PLANTS, 2019, 卷号: 5, 期号: 5, 页码: 461-470
Authors:  Li, Hong-Tao;  Yi, Ting-Shuang;  Gao, Lian-Ming;  Ma, Peng-Fei;  Zhang, Ting;  Yang, Jun-Bo;  Gitzendanner, Matthew A.;  Fritsch, Peter W.;  Cai, Jie;  Luo, Yang;  Wang, Hong;  van der Bank, Michelle;  Zhang, Shu-Dong;  Wang, Qing-Feng;  Wang, Jian;  Zhang, Zhi-Rong;  Fu, Chao-Nan;  Yang, Jing;  Hollingsworth, Peter M.;  Chase, Mark W.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Li, De-Zhu
View  |  Adobe PDF(1707Kb)  |  Favorite  |  View/Download:188/26  |  Submit date:2019/07/29
Plastid phylogenomic insights into the evolution of Caryophyllales 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 卷号: 134, 页码: 74-86
Authors:  Yao, Gang;  Jin, Jian-Jun;  Li, Hong-Tao;  Yang, Jun-Bo;  Mandala, Venkata Shiva;  Croley, Matthew;  Mostow, Rebecca;  Douglas, Norman A.;  Chase, Mark W.;  Christenhusz, Maarten J. M.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Smith, Stephen A.;  Brockington, Samuel F.;  Moore, Michael J.;  Yi, Ting-Shuang;  Li, De-Zhu
View  |  Adobe PDF(4374Kb)  |  Favorite  |  View/Download:164/17  |  Submit date:2019/04/15
Caryophyllales  Gene loss  Molecular dating  Phylogenomics  Plastome  Rapid radiation  Substitution rate  
一种水角的组培方法及其在种质保存中的应用 专利
申请日期: 2018-12-18, 公开日期: 2019-02-05
Inventors:  何俊;  张挺;  杨娟;  蔡杰;  亚吉东;  李村富;  李春芳;  李德铢
Favorite  |  View/Download:267/0  |  Submit date:2019/08/14
Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution 期刊论文
BMC GENOMICS, 2017, 卷号: 18, 页码: 956
Authors:  Fu, Chao-Nan;  Li, Hong-Tao;  Milne, Richard;  Zhang, Ting;  Ma, Peng-Fei;  Yang, Jing;  Li, De-Zhu;  Gao, Lian-Ming
View  |  Adobe PDF(3094Kb)  |  Favorite  |  View/Download:406/10  |  Submit date:2018/05/08
Plastid Genome  Phylogenomics  Cornales  Alignment  Partitioning Schemes  Gene Loss