Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome

doi:10.1111/jse.12548

KIB OpenIR

	Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome
	Jin,Gui-Hua ; Zhou,Yan-Li ; Yang,Hong ; Hu,Yan-Ting ; Shi,Yong ; Li,Ling ; Siddique,Abu N.; Liu,Chang-Ning ; Zhu,An-Dan ; Zhang,Cheng-Jun ; Li,De-Zhu
	2021
发表期刊	JOURNAL OF SYSTEMATICS AND EVOLUTION
ISSN	1674-4918
卷号	59 期号:2 页码:341-351
摘要	Orphan genes are genetic innovations that lack homologs in other lineages. Orphan genes can rapidly originate and become substantially functional, yet the mechanisms underlying their origins are still largely unknown in plants. Here, we investigated the origin of orphan genes in the Oryza sativa ssp. japonica Nipponbare genome using genome-wide comparisons with 10 closely related Oryza species. We identified a total of 37 orphan genes in the Nipponbare genome that show short sequence lengths, elevated GC content, and absence of introns. Interestingly, half of the identified orphan genes originated by way of a distinctive mechanism that involved the generation of new coding sequences through independent and rapid divergence within the inserted transposable element. Our results provide valuable insight into genetic innovations in the model rice genome that formed on a very short timescale.
关键词	comparative genomics origin orphan gene transposable element LINEAGE-SPECIFIC GENES EVOLUTION ORIGIN IDENTIFICATION EMERGENCE PROTEIN DUPLICATION ALIGNMENT SETS
DOI	10.1111/jse.12548
WOS记录号	WOS:000499738800001
引用统计	被引频次：14[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/73087
专题	中国科学院昆明植物研究所
作者单位	1.[Jin, Gui-Hua 2.Zhou, Yan-Li 3.Yang, Hong 4.Hu, Yan-Ting 5.Shi, Yong 6.Li, Ling 7.Siddique, Abu N. 8.Zhu, An-Dan 9.Zhang, Cheng-Jun 10.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 11.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 12.[Siddique, Abu N.] Bacha Khan Univ, Dept Biotechnol, Charsadda 24420, Pakistan 13.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Menglun 666303, Yunnan, Peoples R China 14.Chinese Acad Sci, Kunming Inst Bot, Haiyan Engn & Technol Ctr, Kunming 650201, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Jin,Gui-Hua,Zhou,Yan-Li,Yang,Hong,et al. Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2021,59(2):341-351.
APA	Jin,Gui-Hua.,Zhou,Yan-Li.,Yang,Hong.,Hu,Yan-Ting.,Shi,Yong.,...&Li,De-Zhu.(2021).Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome.JOURNAL OF SYSTEMATICS AND EVOLUTION,59(2),341-351.
MLA	Jin,Gui-Hua,et al."Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome".JOURNAL OF SYSTEMATICS AND EVOLUTION 59.2(2021):341-351.