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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales 期刊论文
NEW PHYTOLOGIST, 2022, 卷号: 233, 期号: 3, 页码: 1383-1400
Authors:  Wu,Gang;  Miyauchi,Shingo;  Morin,Emmanuelle;  Kuo,Alan;  Drula,Elodie;  Varga,Torda;  Kohler,Annegret;  Feng,Bang;  Cao,Yang;  Lipzen,Anna;  Daum,Christopher;  Hundley,Hope;  Pangilinan,Jasmyn;  Johnson,Jenifer;  Barry,Kerrie;  LaButti,Kurt;  Ng,Vivian;  Ahrendt,Steven;  Min,Byoungnam;  Choi,In-Geol;  Park,Hongjae;  Plett,Jonathan M.;  Magnuson,Jon;  Spatafora,Joseph W.;  Nagy,Laszlo G.;  Henrissat,Bernard;  Grigoriev,Igor V.;  Yang,Zhu-Liang;  Xu,Jianping;  Martin,Francis M.
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Boletales  brown-rot fungi  CAZymes  comparative genomics  ectomycorrhizal fungi  trait evolution  R/BIOCONDUCTOR PACKAGE  PHYLOGENETIC ANALYSIS  HOST-SPECIFICITY  FUNGI  GENUS  DIVERSITY  
Transcriptome Profiling Reveals Differential Gene Expression of Secreted Proteases and Highly Specific Gene Repertoires Involved in Lactarius-Pinus Symbioses 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12, 页码: 714393
Authors:  Tang,Nianwu;  Lebreton,Annie;  Xu,Wenjun;  Dai,Yucheng;  Yu,Fuqiang;  Martin,Francis M.
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genomics  evolution  milkcap mushrooms  proteases  host-specificity  BASIDIOMYCETE HEBELOMA-CYLINDROSPORUM  LACCARIA-BICOLOR  ECTOMYCORRHIZAL FUNGI  COMPARATIVE GENOMICS  PROTEIN  IDENTIFICATION  PLANT  MECHANISMS  MUSHROOM  LECTIN  
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae 期刊论文
MOLECULAR PLANT, 2021, 卷号: 14, 期号: 5, 页码: 748-773
Authors:  Zhao,Yiyong;  Zhang,Rong;  Jiang,Kai-Wen;  Qi,Ji;  Hu,Yi;  Guo,Jing;  Zhu,Renbin;  Zhang,Taikui;  Egan,Ashley N.;  Yi,Ting-Shuang;  Huang,Chien-Hsun;  Ma,Hong
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Fabaceae  Leguminosae  nuclear phylogeny  divergence times  whole-genome duplication  rhizobial nodulation  COMPARATIVE GENOMICS  PHYLOGENETIC PERSPECTIVES  EARLY DIVERSIFICATION  PENALIZED LIKELIHOOD  ANCESTRAL POLYPLOIDY  MOLECULAR EVOLUTION  LOTUS-JAPONICUS  ANALYSES REVEAL  GENE  LEGUMINOSAE  
Phylogeny of the Styracaceae Revisited Based on Whole Plastome Sequences, Including Novel Plastome Data from Parastyrax 期刊论文
SYSTEMATIC BOTANY, 2021, 卷号: 46, 期号: 1, 页码: 162-174
Authors:  Yan,Ming-Hui;  Li,Chun-Yang;  Fritsch,Peter W.;  Cai,Jie;  Wang,Heng-Chang
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Morphological and molecular evidence  non-coding regions  Parastyrax lacei  systematics  COMPARATIVE CHLOROPLAST GENOMICS  MOLECULAR EVOLUTION  DNA  FAMILY  BIOGEOGRAPHY  ASTERACEAE  CONFLICT  ERICALES  REVEALS  POACEAE  
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 2, 页码: 341-351
Authors:  Jin,Gui-Hua;  Zhou,Yan-Li;  Yang,Hong;  Hu,Yan-Ting;  Shi,Yong;  Li,Ling;  Siddique,Abu N.;  Liu,Chang-Ning;  Zhu,An-Dan;  Zhang,Cheng-Jun;  Li,De-Zhu
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comparative genomics  origin  orphan gene  transposable element  LINEAGE-SPECIFIC GENES  EVOLUTION  ORIGIN  IDENTIFICATION  EMERGENCE  PROTEIN  DUPLICATION  ALIGNMENT  SETS  
Plastome Evolution in the Hyperdiverse Genus Euphorbia (Euphorbiaceae) Using Phylogenomic and Comparative Analyses: Large-Scale Expansion and Contraction of the Inverted Repeat Region 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12, 页码: 712064
Authors:  Wei,Neng;  Perez-Escobar,Oscar A.;  Musili,Paul M.;  Huang,Wei-Chang;  Yang,Jun-Bo;  Hu,Ai-Qun;  Hu,Guang-Wan;  Grace,Olwen M.;  Wang,Qing-Feng
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comparative genomics  organellar evolution  phylogenetic inference  plastome rearrangement  spurge family  structural variations  COMPLETE CHLOROPLAST GENOME  RETICULATE EVOLUTION  MOLECULAR PHYLOGENY  SUBSTITUTION RATES  MULTIPLE ALIGNMENT  DNA-SEQUENCES  CLASSIFICATION  REVEAL  PLANT  RECOMBINATION  
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 页码: 11
Authors:  Jin, Gui-Hua;  Zhou, Yan-Li;  Yang, Hong;  Hu, Yan-Ting;  Shi, Yong;  Li, Ling;  Siddique, Abu N.;  Liu, Chang-Ning;  Zhu, An-Dan;  Zhang, Cheng-Jun;  Li, De-Zhu
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comparative genomics  origin  orphan gene  transposable element  
Plastome sequences help to improve the systematic position of trinerved Lindera species in the family Lauraceae 期刊论文
PEERJ, 2019, 卷号: 7, 页码: 17
Authors:  Tian, Xiangyu;  Ye, Junwei;  Song, Yu
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Lauraceae  Complete plastid genome  Lindera  Phylogenetic relationship  Comparative genomics  
Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos 期刊论文
MOLECULAR PLANT, 2019, 卷号: 12, 期号: 10, 页码: 1353-1365
Authors:  Guo, Zhen-Hua;  Ma, Peng-Fei;  Yang, Guo-Qian;  Hu, Jin-Yong;  Liu, Yun-Long;  Xia, En-Hua;  Zhong, Mi-Cai;  Zhao, Lei;  Sun, Gui-Ling;  Xu, Yu-Xing;  Zhao, You-Jie;  Zhang, Yi-Chi;  Zhang, Yu-Xiao;  Zhang, Xue-Mei;  Zhou, Meng-Yuan;  Guo, Ying;  Guo, Cen;  Liu, Jing-Xia;  Ye, Xia-Ying;  Chen, Yun-Mei;  Yang, Yang;  Hang, Bin;  Lin, Choun-Sea;  Lu, Ying;  Li, De-Zhu
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Bambusoideae  polyploidization  comparative genomics  subgenome evolution  flowering  
The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis 期刊论文
MOLECULAR PLANT, 2017, 卷号: 10, 页码: 866-877
Authors:  Xia, En-Hua;  Zhang, Hai-Bin;  Sheng, Jun;  Li, Kui;  Zhang, Qun-Jie;  Kim, Changhoon;  Zhang, Yun;  Liu, Yuan;  Zhu, Ting;  Li, Wei;  Huang, Hui;  Tong, Yan;  Nan, Hong;  Shi, Cong;  Shi, Chao;  Jiang, Jian-Jun;  Mao, Shu-Yan;  Jiao, Jun-Ying;  Zhang, Dan;  Zhao, Yuan;  Zhao, You-Jie;  Zhang, Li-Ping;  Liu, Yun-Long;  Liu, Ben-Ying;  Yu, Yue;  Shao, Sheng-Fu;  Ni, De-Jiang;  Eichler, Evan E.;  Gao, Li-Zhi
Adobe PDF(778Kb)  |  Favorite  |  View/Download：387/123  |  Submit date：2017/07/18
Tea Tree Genome  Comparative Genomics  Tea Flavor  Tea-proccessing Suitability  Global Adaptation  Caffeine Biosynthesis