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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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共享文献 [279]
中国科学院东亚植... [248]
昆明植物所硕博研... [125]
植物化学与西部植... [116]
中国西南野生生物种... [98]
资源植物与生物技术... [74]
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李德铢 [80]
Sun Hang [79]
伊廷双 [33]
龚洵 [30]
杨祝良 [29]
高立志 [27]
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PLOS ONE [38]
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GST,p < 0.001) and low levels of seed-based gene flow. C. debaoensis (Cycadaceae) is an endangered species restricted to the border of Guangxi and Yunnan province in southwest China. This species has been classified into two types: sand and karst, according to the soil matrix they grow on. We examined chloroplast sequence variation of the cpDNA sequences from 11 populations of this species. Significant population genetic differentiation was detected (GST= 0.684 and FST = 0.74160). There was marked genetic differentiation between populations in the sand and karst regions and no expansion was detected. Climate changes during glacial periods have had significant effects on the current distribution of cycads. The molecular phylogenetic data, together with the geographic distribution of the haplotypes, suggest that C. debaoensis experienced range contraction during glacial periods, and that the current populations are still confined to the original refugia in southwest China which have favorable habitats in glacial period. These results imply that small refugia were maintained in both sand and karst regions during the LGM (last glacial maximum). This species had no postglacial recolonization and only stayed in these refugia up to now. The low within-population diversity of C. debaoensis suggests that there were strong bottleneck events or founder effects within each separate region during the Quaternary climatic oscillations. Relatively high genetic and haplotype diversities were detected in the newly discovered populations, which located at intermediate locality of sand regions and had morphological variation; this is probably the consequence of the admixture of different haplotypes colonizing the area from separate sources. C. micholitzii occurs in the Annan Highlands in central Vietnam near the Laos border. C. bifida occurs in North Vietnam; its distribution extends across the border into adjacent localities in Guangxi and Yunnan in China. For the comparability between them,theywere considered as the same species C. micholitzii by many academicians. The cpDNA sequences from 11 populations showed that these very controversial species, C. micholitzii and C. bifida, is paraphyletic and should belong to the same species C. micholitzii. AMOVA analysis showed that the component of among-population within region/species (76.46%) was unexpectedly larger than the among-species/region component (14.97%), which also indicates that there is no justification for recognizing two species as C. micholitzii and C. bifida. This hypothesis was also supported by the geological data, especially the neotectonic history of the indo-china block, which started to move south since Oligocene and cause the geographic isolation of these two groups. Therefore, the most likely explanation to the phenotypic similarities between these two groups may be the retention of ancestral polymorphisms in the paraphyletic group due to incomplete lineage sorting. Furthermore, the similarities may also be ascribed to pollen-mediated gene flow among geographically proximate populations and/or phenotypic convergence under similar selection schemes in the same region. C.micholitzi had the higest genetic diversity (HT = 0.980,) and genetic differentiation (GST = 0.830, NST = 0.915) among the C. micholitzii complex. The high genetic diversity might be attributed to its long evolutionary history, highly diverse habitats. The ineffective mode of seed dispersal and dramatic neotectonic movement in the distribution range of this species could result in the high genetic differentiation. 2. Phylogeographic analysis based on nuclear ribosomal sequences, We sequenced the nrDNA ITS in all 27 populations sampled, 7 haplotypes were identified, among which C. micholitzii had 6, while C. multipinnata, C. longipetiolula and C. debaoensis shared the remaining one. Compared to chloroplast genes, nuclear genes had higher correlation between genetic and geographical distance, but lower interspecies differentiation (54.42% vs 25.24%). Phylogeographical structure of C. micholitzii and C.bifida based on ITS Variation was consistent with the morphology differentiation. This similar in nuclear gene should be ascribed to pollen-mediated gene flow among geographically proximate populations.Long-distance gene flow over the two groups was clearly interrupted, which brought on the nrDNA genetic differenciation between the geographically isolated groups, to a certain extent affected the morphological variation. 3. Interspecies relationships among Cycas micholitzii complex, We analysed chloroplast sequence variation of the atpB-rbcL and psbA-trnH intergenic spacers in 27 populations sampled of C. micholitzii complex, AMOVA analysis showed that the component of among-species/region component (59.21%). However, phylogenic analysis showed that the haplotypes of C. micholitzii complex couldn`t grouped into four clusters closely corresponding to the narrowly defined C. micholitzi, C. multipinnata, C. debaoensis and C. longipetiolula. We concluded that the conflict may result from several factors: firstly incomplete lineage sorting of C. micholitzii; secondly hybridization/introgression of sympatrically cycads, which would be supported by evidence base on nrDNA ITS sequences; thirdly intramolecular recombination in cpDNA of cycads; eventually the neotectonic movement in the distribution range of this 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Science Foundation, GAR[P506/14/13541S]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=Substitution%2Brate&order=desc&&fq=dc.project.title_filter%3ACzech%5C+Science%5C+Foundation%2C%5C+GAR%5C%5BP506%5C%2F14%5C%2F13541S%5C%5D"},{"jsname":"ECOLPIN[AGL2011-24296]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=Substitution%2Brate&order=desc&&fq=dc.project.title_filter%3AECOLPIN%5C%5BAGL2011%5C-24296%5C%5D"},{"jsname":"lastIndexed","jscount":"2023-04-02"}],"Funding Project","dc.project.title_filter")'>
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Pharmacology and anti-addiction effects of the novel kappa opioid receptor agonist Mesyl Sal B, a potent and long-acting analogue of salvinorin A
期刊论文
出版物, 3111, 期号: 0, 页码: 1-53
Authors:
B Simonson
;
A S Morani
;
A W M Ewald
;
L Walker
;
N Kumar
;
D Simpson
;
J H Miller
;
T E Prisinzano
;
B M Kivell
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Submit date：2017/07/24
Evolutionary ecology of plant-plant interactions
期刊论文
出版物, 3111, 页码: 1-144
Authors:
Zuo Z(作者)
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Submit date：2017/07/19
Structural and mechanistic basis of penicillin-bindingprotein inhibition by lactivicins
期刊论文
NATURE CHEMICAL BIOLOGY, 3111, 期号: 0, 页码: 1—5
Authors:
Pauline Macheboeuf
;
Delphine S Fischer
;
Tom Brown Jr
;
Astrid Zervosen
;
Andre´Luxen
;
Bernard Joris
;
Andrea Dessen
;
Christopher J Schofield
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Submit date：2017/07/21
PRIMER EXTENSION ENRICHMENTREACTION (PEER) AND OTHER METHODSFOR DIFFERENCE SCREENING
期刊论文
Nucleic Acids Hybridization, 3111, 页码: 125-165
Authors:
Qi Jun ZHANG
;
Hui DOU
;
Qun Xiong ZHENG
;
Chang Xin ZHOU
;
Zhao Jun XU
;
Hua PENG
;
Yu ZHAO
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Submit date：2017/07/19
Data Analysisin Vegetation Ecology
期刊论文
出版物, 3111, 期号: 0, 页码: 1-297
Authors:
Otto Wildi
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Submit date：2017/07/24
Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China
期刊论文
JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 2021, 卷号: 146, 期号: 6, 页码: 424-434
Authors:
Ma,Xiangli
;
Tang,Min
;
Bi,Yufen
;
Yang,Junbo
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Submit date：2022/04/02
conservation
genetic differentiation
orchid
three parallel rivers region
MUTATION-RATE
GENOME
DIFFERENTIATION
MITOCHONDRIAL
ORCHIDACEAE
SEQUENCES
ELEVATION
TESTS
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
期刊论文
nature plants, 2021
Authors:
Gregory W. Stull
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Submit date：2021/08/23
Genomic insights into adaptation to heterogeneous environments for the ancient relictualCircaeaster agrestis(Circaeasteraceae, Ranunculales)
期刊论文
NEW PHYTOLOGIST, 2020
Authors:
Zhang, Xu
;
Sun, Yanxia
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Landis, Jacob B.
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Zhang, Jianwen
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Yang, Linsen
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Lin, Nan
;
Zhang, Huajie
;
Guo, Rui
;
Li, Lijuan
;
Zhang, Yonghong
;
Deng, Tao
;
Sun, Hang
;
Wang, Hengchang
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Submit date：2021/01/05
SMRT- and Illumina-based RNA-seq analyses unveil the ginsinoside biosynthesis and transcriptomic complexity in Panax notoginseng
期刊论文
SCIENTIFIC REPORTS, 2020
Authors:
Zhang, Dan
;
Li, Wei
;
Chen, Zhong-jian
;
Wei, Fu-gang
;
Liu, Yun-long
;
Gao, Li-zhi
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Submit date：2021/01/05
A global plastid phylogeny of the fern genus Asplenium (Aspleniaceae)
期刊论文
CLADISTICS, 2020
Authors:
Xu, Ke-Wang
;
Zhang, Liang
;
Rothfels, Carl J.
;
Smith, Alan R.
;
Viane, Ronald
;
Lorence, David
;
Wood, Kenneth R.
;
Chen, Cheng-Wei
;
Knapp, Ralf
;
Zhou, Lin
;
Ngan Thi Lu
;
Zhou, Xin-Mao
;
Wei, Hong-Jin
;
Fan, Qiang
;
Chen, Su-Fang
;
Cicuzza, Daniele
;
Gao, Xin-Fen
;
Liao, Wen-Bo
;
Zhang, Li-Bing
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Submit date：2021/01/05
