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Plastid phylogenomic insights into the evolution of Caryophyllales
Yao, Gang1,2; Jin, Jian-Jun2,3; Li, Hong-Tao1; Yang, Jun-Bo1; Mandala, Venkata Shiva4,5; Croley, Matthew4; Mostow, Rebecca4,14; Douglas, Norman A.6; Chase, Mark W.7,8; Christenhusz, Maarten J. M.7,9,10; Soltis, Douglas E.6,11; Soltis, Pamela S.11; Smith, Stephen A.12; Brockington, Samuel F.13; Moore, Michael J.4; Yi, Ting-Shuang1,2; Li, De-Zhu1,2
Corresponding AuthorYi, Ting-Shuang(tingshuangyi@mail.kib.ac.cn) ; Li, De-Zhu(dzl@mail.kib.ac.cn)
2019-05-01
Source PublicationMOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN1055-7903
Volume134Pages:74-86
AbstractThe Caryophyllales includes 40 families and 12,500 species, representing a large and diverse Glade of angios-perms. Collectively, members of the Glade grow on all continents and in all terrestrial biomes and often occupy extreme habitats (e.g., xeric, salty). The order is characterized by many taxa with unusual adaptations including carnivory, halophytism, and multiple origins of C-4 photosynthesis. However, deep phylogenetic relationships within the order have long been problematic due to putative rapid divergence. To resolve the deep-level relationships of Caryophyllales, we performed phylogenomic analyses of all 40 families of Caryophyllales. We time-calibrated the molecular phylogeny of this Glade, and evaluated putative correlations among plastid structural changes and rates of molecular substitution. We recovered a well-resolved and well-supported phylogeny of the Caryophyllales that was largely congruent with previous estimates of this order. Our results provide improved support for the phylogenetic position of several key families within this Glade. The crown age of Caryophyllales was estimated at ca. 114.4 million years ago (Ma), with periods of rapid divergence in the mid-Cretaceous. A strong, positive correlation between nucleotide substitution rate and plastid structural changes was detected. Our study highlights the importance of broad taxon sampling in phylogenomic inference and provides a firm basis for future investigations of molecular, morphological, and ecophysiological evolution in Caryophyllales.
KeywordCaryophyllales Gene loss Molecular dating Phylogenomics Plastome Rapid radiation Substitution rate
DOI10.1016/j.ympev.2018.12.023
Indexed BySCI
Language英语
WOS Research AreaBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS SubjectBiochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS IDWOS:000461057700008
Citation statistics
Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/65000
Collection中国西南野生生物种质资源库
中国科学院东亚植物多样性与生物地理学重点实验室
Corresponding AuthorYi, Ting-Shuang; Li, De-Zhu
Affiliation1.Chinese Acad Sci, Germplasm Bank Wild Species, Kunming Inst Bot, Kunming 650201, Yunnan, Peoples R China
2.Chinese Acad Sci, Key Lab Plant Biodivers & Biogeog, Kunming Inst Bot, Kunming 650201, Yunnan, Peoples R China
3.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650201, Yunnan, Peoples R China
4.Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA
5.MIT, Dept Chem, Cambridge, MA 02139 USA
6.Univ Florida, Dept Biol, Gainesville, FL 32611 USA
7.Royal Bot Gardens, Richmond TW9 3DS, Surrey, England
8.Univ Western Australia, Sch Biol Sci, Crawley, WA 6009, Australia
9.Curtin Univ, Dept Environm & Agr, Bentley, WA 6102, Australia
10.GPO Box U1987, Perth, WA 6845, Australia
11.Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA
12.Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
13.Univ Cambridge, Dept Plant Sci, Cambridge CB2 3EA, England
14.Oregon State Univ, Dept Integrat Biol, Corvallis, OR 97331 USA
Recommended Citation
GB/T 7714
Yao, Gang,Jin, Jian-Jun,Li, Hong-Tao,et al. Plastid phylogenomic insights into the evolution of Caryophyllales[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2019,134:74-86.
APA Yao, Gang.,Jin, Jian-Jun.,Li, Hong-Tao.,Yang, Jun-Bo.,Mandala, Venkata Shiva.,...&Li, De-Zhu.(2019).Plastid phylogenomic insights into the evolution of Caryophyllales.MOLECULAR PHYLOGENETICS AND EVOLUTION,134,74-86.
MLA Yao, Gang,et al."Plastid phylogenomic insights into the evolution of Caryophyllales".MOLECULAR PHYLOGENETICS AND EVOLUTION 134(2019):74-86.
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