| Plastid phylogenomic insights into the evolution of Caryophyllales | |
Yao, Gang1,2 ; Jin, Jian-Jun2,3; Li, Hong-Tao1; Yang, Jun-Bo1; Mandala, Venkata Shiva4,5; Croley, Matthew4; Mostow, Rebecca4,14; Douglas, Norman A.6; Chase, Mark W.7,8; Christenhusz, Maarten J. M.7,9,10; Soltis, Douglas E.6,11; Soltis, Pamela S.11; Smith, Stephen A.12; Brockington, Samuel F.13; Moore, Michael J.4; Yi, Ting-Shuang1,2; Li, De-Zhu1,2
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| Corresponding Author | Yi, Ting-Shuang(tingshuangyi@mail.kib.ac.cn) ; Li, De-Zhu(dzl@mail.kib.ac.cn) |
| 2019-05-01 | |
| Source Publication | MOLECULAR PHYLOGENETICS AND EVOLUTION
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| ISSN | 1055-7903 |
| Volume | 134Pages:74-86 |
| Abstract | The Caryophyllales includes 40 families and 12,500 species, representing a large and diverse Glade of angios-perms. Collectively, members of the Glade grow on all continents and in all terrestrial biomes and often occupy extreme habitats (e.g., xeric, salty). The order is characterized by many taxa with unusual adaptations including carnivory, halophytism, and multiple origins of C-4 photosynthesis. However, deep phylogenetic relationships within the order have long been problematic due to putative rapid divergence. To resolve the deep-level relationships of Caryophyllales, we performed phylogenomic analyses of all 40 families of Caryophyllales. We time-calibrated the molecular phylogeny of this Glade, and evaluated putative correlations among plastid structural changes and rates of molecular substitution. We recovered a well-resolved and well-supported phylogeny of the Caryophyllales that was largely congruent with previous estimates of this order. Our results provide improved support for the phylogenetic position of several key families within this Glade. The crown age of Caryophyllales was estimated at ca. 114.4 million years ago (Ma), with periods of rapid divergence in the mid-Cretaceous. A strong, positive correlation between nucleotide substitution rate and plastid structural changes was detected. Our study highlights the importance of broad taxon sampling in phylogenomic inference and provides a firm basis for future investigations of molecular, morphological, and ecophysiological evolution in Caryophyllales. |
| Keyword | Caryophyllales Gene loss Molecular dating Phylogenomics Plastome Rapid radiation Substitution rate |
| DOI | 10.1016/j.ympev.2018.12.023 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:000461057700008 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.kib.ac.cn/handle/151853/65000 |
| Collection | 中国西南野生生物种质资源库 中国科学院东亚植物多样性与生物地理学重点实验室 |
| Corresponding Author | Yi, Ting-Shuang; Li, De-Zhu |
| Affiliation | 1.Chinese Acad Sci, Germplasm Bank Wild Species, Kunming Inst Bot, Kunming 650201, Yunnan, Peoples R China 2.Chinese Acad Sci, Key Lab Plant Biodivers & Biogeog, Kunming Inst Bot, Kunming 650201, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650201, Yunnan, Peoples R China 4.Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA 5.MIT, Dept Chem, Cambridge, MA 02139 USA 6.Univ Florida, Dept Biol, Gainesville, FL 32611 USA 7.Royal Bot Gardens, Richmond TW9 3DS, Surrey, England 8.Univ Western Australia, Sch Biol Sci, Crawley, WA 6009, Australia 9.Curtin Univ, Dept Environm & Agr, Bentley, WA 6102, Australia 10.GPO Box U1987, Perth, WA 6845, Australia 11.Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 12.Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA 13.Univ Cambridge, Dept Plant Sci, Cambridge CB2 3EA, England 14.Oregon State Univ, Dept Integrat Biol, Corvallis, OR 97331 USA |
| Recommended Citation GB/T 7714 | Yao, Gang,Jin, Jian-Jun,Li, Hong-Tao,et al. Plastid phylogenomic insights into the evolution of Caryophyllales[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2019,134:74-86. |
| APA | Yao, Gang.,Jin, Jian-Jun.,Li, Hong-Tao.,Yang, Jun-Bo.,Mandala, Venkata Shiva.,...&Li, De-Zhu.(2019).Plastid phylogenomic insights into the evolution of Caryophyllales.MOLECULAR PHYLOGENETICS AND EVOLUTION,134,74-86. |
| MLA | Yao, Gang,et al."Plastid phylogenomic insights into the evolution of Caryophyllales".MOLECULAR PHYLOGENETICS AND EVOLUTION 134(2019):74-86. |
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| Yao-2019-Plastid phy（4374KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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