Plastid phylogenomic insights into relationships of all flowering plant families

doi:10.1186/s12915-021-01166-2

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	Plastid phylogenomic insights into relationships of all flowering plant families
	Li,Hong-Tao ; Luo,Yang ; Gan,Lu; Ma,Peng-Fei ; Gao,Lian-Ming; Yang,Jun-Bo ; Cai,Jie ; Gitzendanner,Matthew A.; Fritsch,Peter W.; Zhang,Ting ; Jin,Jian-Jun ; Zeng,Chun-Xia ; Wang,Hong; Yu,Wen-Bin ; Zhang,Rong ; van der Bank,Michelle ; Olmstead,Richard G.; Hollingsworth,Peter M.; Chase,Mark W.; Soltis,Douglas E.; Soltis,Pamela S.; Yi,Ting-Shuang ; Li,De-Zhu
	2021
Source Publication	BMC BIOLOGY
ISSN	1741-7007
Volume	19 Issue:1 Pages:232
Abstract	Background Flowering plants (angiosperms) are dominant components of global terrestrial ecosystems, but phylogenetic relationships at the familial level and above remain only partially resolved, greatly impeding our full understanding of their evolution and early diversification. The plastome, typically mapped as a circular genome, has been the most important molecular data source for plant phylogeny reconstruction for decades. Results Here, we assembled by far the largest plastid dataset of angiosperms, composed of 80 genes from 4792 plastomes of 4660 species in 2024 genera representing all currently recognized families. Our phylogenetic tree (PPA II) is essentially congruent with those of previous plastid phylogenomic analyses but generally provides greater clade support. In the PPA II tree, 75% of nodes at or above the ordinal level and 78% at or above the familial level were resolved with high bootstrap support (BP >= 90). We obtained strong support for many interordinal and interfamilial relationships that were poorly resolved previously within the core eudicots, such as Dilleniales, Saxifragales, and Vitales being resolved as successive sisters to the remaining rosids, and Santalales, Berberidopsidales, and Caryophyllales as successive sisters to the asterids. However, the placement of magnoliids, although resolved as sister to all other Mesangiospermae, is not well supported and disagrees with topologies inferred from nuclear data. Relationships among the five major clades of Mesangiospermae remain intractable despite increased sampling, probably due to an ancient rapid radiation. Conclusions We provide the most comprehensive dataset of plastomes to date and a well-resolved phylogenetic tree, which together provide a strong foundation for future evolutionary studies of flowering plants.
Keyword	Mesangiospermae Tree of life Interfamilial relationships Plastome PPA II MULTIPLE SEQUENCE ALIGNMENT EARLY DIVERSIFICATION CHLOROPLAST GENOME SEED PLANTS SCALE DATA ANGIOSPERMS GENES PHYLOGENETICS RBCL RESOLVES
DOI	10.1186/s12915-021-01166-2
WOS ID	WOS:000712410200001
Citation statistics
Document Type	期刊论文
Identifier	http://ir.kib.ac.cn/handle/151853/73119
Collection	中国科学院昆明植物研究所
Affiliation	1.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 2.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650201, Yunnan, Peoples R China 3.Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Yunnan, Peoples R China 4.Chinese Acad Sci, Kunming Inst Bot, Lijiang Forest Ecosyst Natl Observat & Res Stn, Lijiang 674100, Yunnan, Peoples R China 5.Gitzendanner, Matthew A.; Soltis, Douglas E.; Soltis, Pamela S.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 6.Gitzendanner, Matthew A.; Soltis, Douglas E.; Soltis, Pamela S.] Univ Florida, Biodivers Inst, Gainesville, FL 32611 USA 7.Fritsch, Peter W.] Bot Res Inst Texas, 1700 Univ Dr, Ft Worth, TX 76017 USA 8.Columbia Univ, Dept Ecol Evolut & Environm Biol, New York, NY 10025 USA 9.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China 10.Univ Johannesburg, Dept Bot & Plant Biotechnol, POB 524, ZA-2006 Johannesburg, South Africa 11.Olmstead, Richard G.] Univ Washington, Dept Biol & Burke Museum, Seattle, WA 98195 USA 12.Hollingsworth, Peter M.] Royal Bot Garden Edinburgh, Edinburgh EH3 5LR, Midlothian, Scotland 13.Chase, Mark W.] Royal Bot Gardens, Richmond TW9 3DS, Surrey, England 14.Chase, Mark W.] Curtin Univ, Dept Environm & Agr, Bentley, WA 6102, Australia 15.Soltis, Pamela S.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA
Recommended Citation GB/T 7714	Li,Hong-Tao,Luo,Yang,Gan,Lu,et al. Plastid phylogenomic insights into relationships of all flowering plant families[J]. BMC BIOLOGY,2021,19(1):232.
APA	Li,Hong-Tao.,Luo,Yang.,Gan,Lu.,Ma,Peng-Fei.,Gao,Lian-Ming.,...&Li,De-Zhu.(2021).Plastid phylogenomic insights into relationships of all flowering plant families.BMC BIOLOGY,19(1),232.
MLA	Li,Hong-Tao,et al."Plastid phylogenomic insights into relationships of all flowering plant families".BMC BIOLOGY 19.1(2021):232.

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