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An integrative framework reveals widespread gene flow during the early radiation of oaks and relatives in Quercoideae (Fagaceae) 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2025, 卷号: 67, 期号: 4, 页码: 1119-1141
Authors:  Liu, Shui-Yin;  Yang, Ying-Ying;  Tian, Qin;  Yang, Zhi-Yun;  Li, Shu-Feng;  Valdes, Paul J.;  Farnsworth, Alex;  Kates, Heather R.;  Siniscalchi, Carolina M.;  Guralnick, Robert P.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Stull, Gregory W.;  Folk, Ryan A.;  Yi, Ting-Shuang
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Rapid in situ diversification rates in Rhamnaceae explain the parallel evolution of high diversity in temperate biomes from global to local scales 期刊论文
NEW PHYTOLOGIST, 2024, 卷号: 241, 期号: 4, 页码: 1851-1865
Authors:  Tian, Qin;  Stull, Gregory W.;  Kellermann, Juergen;  Medan, Diego;  Nge, Francis J.;  Liu, Shui-Yin;  Kates, Heather R.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Guralnick, Robert P.;  Folk, Ryan A.;  Onstein, Renske E.;  Yi, Ting-Shuang
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Phylogenomics and the rise of the angiosperms 期刊论文
NATURE, 2024, 卷号: 629, 期号: 8013, 页码: -
Authors:  Zuntini, Alexandre R.;  Carruthers, Tom;  Maurin, Olivier;  Bailey, Paul C.;  Leempoel, Kevin;  Brewer, Grace E.;  Epitawalage, Niroshini;  Francoso, Elaine;  Gallego-Paramo, Berta;  McGinnie, Catherine;  Negrao, Raquel;  Roy, Shyamali R.;  Simpson, Lalita;  Romero, Eduardo Toledo;  Barber, Vanessa M. A.;  Botigue, Laura;  Clarkson, James J.;  Cowan, Robyn S.;  Dodsworth, Steven;  Johnson, Matthew G.;  Kim, Jan T.;  Pokorny, Lisa;  Wickett, Norman J.;  Antar, Guilherme M.;  DeBolt, Lucinda;  Gutierrez, Karime;  Hendriks, Kasper P.;  Hoewener, Alina;  Hu, Ai-Qun;  Joyce, Elizabeth M.;  Kikuchi, Izai A. B. S.;  Larridon, Isabel;  Larson, Drew A.;  de Lirio, Elton John;  Liu, Jing-Xia;  Malakasi, Panagiota;  Przelomska, Natalia A. S.;  Shah, Toral;  Viruel, Juan;  Allnutt, Theodore R.;  Ameka, Gabriel K.;  Andrew, Rose L.;  Appelhans, Marc S.;  Arista, Montserrat;  Ariza, Maria Jesus;  Arroyo, Juan;  Arthan, Watchara;  Bachelier, Julien B.;  Bailey, C. Donovan;  Barnes, Helen F.;  Barrett, Matthew D.;  Barrett, Russell L.;  Bayer, Randall J.;  Bayly, Michael J.;  Biffin, Ed;  Bigg, Nicky;  Birch, Joanne L.;  Bogarin, Diego;  Borosova, Renata;  Bowles, Alexander M. C.;  Boyce, Peter C.;  Bramley, Gemma L. C.;  Briggs, Marie;  Broadhurst, Linda;  Brown, Gillian K.;  Bruhl, Jeremy J.;  Bruneau, Anne;  Buerki, Sven;  Burns, Edie;  Byrne, Margaret;  Cable, Stuart;  Calladine, Ainsley;  Callmander, Martin W.;  Cano, Angela;  Cantrill, David J.;  Cardinal-McTeague, Warren M.;  Carlsen, Monica M.;  Carruthers, Abigail J. A.;  Mateo, Alejandra de Castro;  Chase, Mark W.;  Chatrou, Lars W.;  Cheek, Martin;  Chen, Shilin;  Christenhusz, Maarten J. M.;  Christin, Pascal-Antoine;  Clements, Mark A.;  Coffey, Skye C.;  Conran, John G.;  Cornejo, Xavier;  Couvreur, Thomas L. P.;  Cowie, Ian D.;  Csiba, Laszlo;  Darbyshire, Iain;  Davidse, Gerrit;  Davies, Nina M. J.;  Davis, Aaron P.;  van Dijk, Kor-jent;  Downie, Stephen R.;  Duretto, Marco F.;  Duvall, Melvin R.;  Edwards, Sara L.;  Eggli, Urs;  Erkens, Roy H. J.;  Escudero, Marcial;  de la Estrella, Manuel;  Fabriani, Federico;  Fay, Michael F.;  Ferreira, Paola de L.;  Ficinski, Sarah Z.;  Fowler, Rachael M.;  Frisby, Sue;  Fu, Lin;  Fulcher, Tim;  Galbany-Casals, Merce;  Gardner, Elliot M.;  German, Dmitry A.;  Giaretta, Augusto;  Gibernau, Marc;  Gillespie, Lynn J.;  Gonzalez, Cynthia C.;  Goyder, David J.;  Graham, Sean W.;  Grall, Aurelie;  Green, Laura;  Gunn, Bee F.;  Gutierrez, Diego G.;  Hackel, Jan;  Haevermans, Thomas;  Haigh, Anna;  Hall, Jocelyn C.;  Hall, Tony;  Harrison, Melissa J.;  Hatt, Sebastian A.;  Hidalgo, Oriane;  Hodkinson, Trevor R.;  Holmes, Gareth D.;  Hopkins, Helen C. F.;  Jackson, Christopher J.;  James, Shelley A.;  Jobson, Richard W.;  Kadereit, Gudrun;  Kahandawala, Imalka M.;  Kainulainen, Kent;  Kato, Masahiro;  Kellogg, Elizabeth A.;  King, Graham J.;  Klejevskaja, Beata;  Klitgaard, Bente B.;  Klopper, Ronell R.;  Knapp, Sandra;  Koch, Marcus A.;  Leebens-Mack, James H.;  Lens, Frederic;  Leon, Christine J.;  Leveille-Bourret, Etienne;  Lewis, Gwilym P.;  Li, De-Zhu;  Li, Lan;  Liede-Schumann, Sigrid;  Livshultz, Tatyana;  Lorence, David;  Lu, Meng;  Lu-Irving, Patricia;  Luber, Jaquelini;  Lucas, Eve J.;  Lujan, Manuel;  Lum, Mabel;  Macfarlane, Terry D.;  Magdalena, Carlos;  Mansano, Vidal F.;  Masters, Lizo E.;  Mayo, Simon J.;  McColl, Kristina;  McDonnell, Angela J.;  McDougall, Andrew E.;  McLay, Todd G. B.;  McPherson, Hannah;  Meneses, Rosa I.;  Merckx, Vincent S. F. T.;  Michelangeli, Fabian A.;  Mitchell, John D.;  Monro, Alexandre K.;  Moore, Michael J.;  Mueller, Taryn L.;  Mummenhoff, Klaus;  Munzinger, Jerome;  Muriel, Priscilla;  Murphy, Daniel J.;  Nargar, Katharina;  Nauheimer, Lars;  Nge, Francis J.;  Nyffeler, Reto;  Orejuela, Andres;  Ortiz, Edgardo M.;  Palazzesi, Luis;  Peixoto, Ariane Luna;  Pell, Susan K.;  Pellicer, Jaume;  Penneys, Darin S.;  Perez-Escobar, Oscar A.;  Persson, Claes;  Pignal, Marc;  Pillon, Yohan;  Pirani, Jose R.;  Plunkett, Gregory M.;  Powell, Robyn F.;  Prance, Ghillean T.;  Puglisi, Carmen;  Qin, Ming;  Rabeler, Richard K.;  Rees, Paul E. J.;  Renner, Matthew;  Roalson, Eric H.;  Rodda, Michele;  Rogers, Zachary S.;  Rokni, Saba;  Rutishauser, Rolf;  de Salas, Miguel F.;  Schaefer, Hanno;  Schley, Rowan J.;  Schmidt-Lebuhn, Alexander;  Shapcott, Alison;  Al-Shehbaz, Ihsan;  Shepherd, Kelly A.;  Simmons, Mark P.;  Simoes, Andre O.;  Simoes, Ana Rita G.;  Siros, Michelle;  Smidt, Eric C.;  Smith, James F.;  Snow, Neil;  Soltis, Douglas E.;  Soltis, Pamela S.;  Soreng, Robert J.;  Sothers, Cynthia A.;  Starr, Julian R.;  Stevens, Peter F.;  Straub, Shannon C. K.;  Struwe, Lena;  Taylor, Jennifer M.;  Telford, Ian R. H.;  Thornhill, Andrew H.;  Tooth, Ifeanna;  Trias-Blasi, Anna;  Udovicic, Frank;  Utteridge, Timothy M. A.;  Del Valle, Jose C.;  Verboom, G. Anthony;  Vonow, Helen P.;  Vorontsova, Maria S.;  de Vos, Jurriaan M.;  Al-Wattar, Noor;  Waycott, Michelle;  Welker, Cassiano A. D.;  White, Adam J.;  Wieringa, Jan J.;  Williamson, Luis T.;  Wilson, Trevor C.;  Wong, Sin Yeng;  Woods, Lisa A.;  Woods, Roseina;  Worboys, Stuart;  Xanthos, Martin;  Yang, Ya;  Zhang, Yu-Xiao;  Zhou, Meng-Yuan;  Zmarzty, Sue;  Zuloaga, Fernando O.;  Antonelli, Alexandre;  Bellot, Sidonie;  Crayn, Darren M.;  Grace, Olwen M.;  Kersey, Paul J.;  Leitch, Ilia J.;  Sauquet, Herve;  Smith, Stephen A.;  Eiserhardt, Wolf L.;  Forest, Felix;  Baker, William J.
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Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance 期刊论文
NATURE GENETICS, 2024, 卷号: 56, 期号: 4, 页码: -
Authors:  Ma, Peng-Fei;  Liu, Yun-Long;  Guo, Cen;  Jin, Guihua;  Guo, Zhen-Hua;  Mao, Ling;  Yang, Yi-Zhou;  Niu, Liang-Zhong;  Wang, Yu-Jiao;  Clark, Lynn G.;  Kellogg, Elizabeth A.;  Xu, Zu-Chang;  Ye, Xia-Ying;  Liu, Jing-Xia;  Zhou, Meng-Yuan;  Luo, Yan;  Yang, Yang;  Soltis, Douglas E.;  Bennetzen, Jeffrey L.;  Soltis, Pamela S.;  Li, De-Zhu
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Phylogenomics, reticulation, and biogeographical history of Elaeagnaceae 期刊论文
PLANT DIVERSITY, 2024, 卷号: 46, 期号: 6, 页码: 683-697
Authors:  Gu, Wei;  Zhang, Ting;  Liu, Shui-Yin;  Tian, Qin;  Yang, Chen-Xuan;  Lu, Qing;  Fu, Xiao-Gang;  Kates, Heather R.;  Stull, Gregory W.;  Soltis, Pamela S.;  Soltis, Douglas E.;  Folk, Ryan A.;  Guralnick, Robert P.;  Li, De-Zhu;  Yi, Ting-Shuang
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Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants 期刊论文
NATURE COMMUNICATIONS, 2024, 卷号: 15, 期号: 1, 页码: 4262
Authors:  Kates, Heather R.;  O'Meara, Brian C.;  LaFrance, Raphael;  Stull, Gregory W.;  James, Euan K.;  Liu, Shui-Yin;  Tian, Qin;  Yi, Ting-Shuang;  Conde, Daniel;  Kirst, Matias;  Ane, Jean-Michel;  Soltis, Douglas E.;  Guralnick, Robert P.;  Soltis, Pamela S.;  Folk, Ryan A.
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Angiosperm phylogenetic diversity is lower in Africa than South America 期刊论文
SCIENCE ADVANCES, 2023, 卷号: 9, 期号: 46, 页码: eadj1022
Authors:  Qian,Hong;  Kessler,Michael;  Zhang,Jian;  Jin,Yi;  Soltis,Douglas E.;  Qian,Shenhua;  Zhou,Yadong;  Soltis,Pamela S.
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PLANT-SPECIES RICHNESS  FLORISTIC DIVERSITY  EASTERN ASIA  CAPE FLORA  ODD MAN  EVOLUTIONARY  DIVERSIFICATION  RADIATION  PATTERNS  CLIMATE  
Deep reticulation: the long legacy of hybridization in vascular plant evolution 期刊论文
PLANT JOURNAL, 2023, 卷号: 114, 期号: 4, 页码: 743-766
Authors:  Stull,Gregory W.;  Pham,Kasey K.;  Soltis,Pamela S.;  Soltis,Douglas E.
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ancient hybridization  gene flow  phylogenomics  polyploidy  reticulation  vascular plants  CHLOROPLAST DNA  GENE FLOW  HYBRID SPECIATION  ANGIOSPERM DIVERSIFICATION  NATURAL HYBRIDIZATION  PHYLOGENETIC ANALYSES  SEED PLANTS  WHITE OAKS  SCALE DATA  POLYPLOIDY  
Phylogeny and Biogeography of Morus (Moraceae) 期刊论文
AGRONOMY-BASEL, 2023, 卷号: 13, 期号: 8, 页码: 2021
Authors:  Yang,Chen-Xuan;  Liu,Shui-Yin;  Zerega,Nyree J. C.;  Stull,Gregory W.;  Gardner,Elliot M.;  Tian,Qin;  Gu,Wei;  Lu,Qing;  Folk,Ryan A.;  Kates,Heather R.;  Guralnick,Robert P.;  Soltis,Douglas E.;  Soltis,Pamela S.;  Wang,Yue-Hua;  Yi,Ting-Shuang
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ancestral area reconstruction  biogeography  dispersal  divergence times  Morus  phylogeny  MULBERRY  EASTERN  EVOLUTION  GENOME  TIME  ASIA  TOOL  
Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication 期刊论文
ANNALS OF BOTANY, 2022, 卷号: 129, 期号: 4, 页码: 457-471
Authors:  Zhang, Qiong;  Zhao, Lei;  Folk, Ryan A.;  Zhao, Jian-Li;  Zamora, Nelson A.;  Yang, Shi-Xiong;  Soltis, Douglas E.;  Soltis, Pamela S.;  Gao, Lian-Ming;  Peng, Hua;  Yu, Xiang-Qin
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