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Phylogenomic insights into the reticulate evolution of Camellia sect. Paracamellia Sealy (Theaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
Authors:  Qin,Sheng-Yuan;  Chen,Kai;  Zhang,Wen-Ju;  Xiang,Xiao-Guo;  Zuo,Zheng-Yu;  Guo,Cen;  Zhao,Yao;  Li,Lin-Feng;  Wang,Yu-Guo;  Song,Zhi-Ping;  Yang,Ji;  Yang,Xiao-Qiang;  Zhang,Jian;  Jin,Wei-Tao;  Wen,Qiang;  Zhao,Song-Zi;  Chen,Jia-Kuan;  Li,De-Zhu;  Rong,Jun
View  |  Adobe PDF(2146Kb)  |  Favorite  |  View/Download：137/27  |  Submit date：2024/07/10
Camellia oleifera  hybridization  phylogenomics  plastome  polyploidization  transcriptome  EVERGREEN BROADLEAVED FORESTS  HISTORY  DYNAMICS  OLEIFERA  CHINA  PHYLOGEOGRAPHY  ALIGNMENT  TREE  
Phylotranscriptomics of Swertiinae (Gentianaceae) reveals that key floral traits are not phylogenetically correlated 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2023, 卷号: 65, 期号: 6, 页码: 1490-1504
Authors:  Chen,Chunlin;  Ruhfel,Brad R.;  Li,Jialiang;  Wang,Zefu;  Zhang,Lushui;  Zhang,Lei;  Mao,Xingxing;  Wang,Ji;  He,Dashan;  Luo,Yue;  Hu,Quanjun;  Duan,Yuanwen;  Xu,Xiaoting;  Xi,Zhenxiang;  Liu,Jianquan
View  |  Adobe PDF(1712Kb)  |  Favorite  |  View/Download：114/18  |  Submit date：2024/07/10
ancient hybridization  floral diversity  Gentianaceae  phylogenomics  Qinghai-Tibet Plateau  subtribe Swertiinae  ADAPTIVE RADIATION  SEQUENCE  EVOLUTION  PHYLOGENY  DIVERSIFICATION  GENTIANELLA  GENTIANINAE  NUCLEAR  SPECIATION  INFERENCE  
Deep reticulation: the long legacy of hybridization in vascular plant evolution 期刊论文
PLANT JOURNAL, 2023, 卷号: 114, 期号: 4, 页码: 743-766
Authors:  Stull,Gregory W.;  Pham,Kasey K.;  Soltis,Pamela S.;  Soltis,Douglas E.
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ancient hybridization  gene flow  phylogenomics  polyploidy  reticulation  vascular plants  CHLOROPLAST DNA  GENE FLOW  HYBRID SPECIATION  ANGIOSPERM DIVERSIFICATION  NATURAL HYBRIDIZATION  PHYLOGENETIC ANALYSES  SEED PLANTS  WHITE OAKS  SCALE DATA  POLYPLOIDY  
Home at last: Molecular phylogenetic analyses support subsuming Metastachydium within Phlomoides (Lamiaceae) 期刊论文
TAXON, 2023
Authors:  Zhao,Yue;  Zhao,Fei;  Salmaki,Yasaman;  Paton,Alan;  Cai,Jie;  Drew,Bryan T.;  Mahmoudi,Chonour;  Efimov,Petr;  Turginov,Orzimat T.;  Liang,Cun-Zhu;  Chen,Ya-Ping;  Xiang,Chun-Lei
View  |  Adobe PDF(2112Kb)  |  Favorite  |  View/Download：97/15  |  Submit date：2024/07/10
Central Asia  Lamioideae  nrITS  Phlomideae  Phlomis  plastome phylogenomics  COMPLETE CHLOROPLAST GENOME  PLASTID DNA  LEPECHINIA LAMIACEAE  LAMIOIDEAE LAMIACEAE  CHARACTER EVOLUTION  NUCLEAR  CLASSIFICATION  POSITION  ORIGIN  GENERA  
Phylogenomics resolves the rediscovered Himalayan endemic Brachymeniopsis gymnostoma (Bryophyta, Funariaceae), as a species of Entosthodon, prompting also the transfer of Clavitheca poeltii 期刊论文
TAXON, 2023, 卷号: 72, 期号: 6, 页码: 1216-1227
Authors:  Zhang,Li;  Zuo,Qin;  Ma,Wen-Zhang;  Shevock,James R.;  Patel,Nikisha;  Johnson,Matthew;  Medina,Rafael;  Wilding,Nicholas;  Goffinet,Bernard
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mosses  nomenclature  phylogenomic reference  taxonomy  RAPID RADIATION  MOSS CALYPTRA  PHYSCOMITRELLA  REJECTS  CUTICLE  
Phylogenomics and morphological evolution of the mega-diverse genus Artemisia (Asteraceae: Anthemideae): implications for its circumscription and infrageneric taxonomy 期刊论文
ANNALS OF BOTANY, 2023, 卷号: 131, 期号: 5, 页码: 867-883
Authors:  Jiao,Bohan;  Chen,Chen;  Wei,Meng;  Niu,Guohao;  Zheng,Jiye;  Zhang,Guojin;  Shen,Jiahao;  Vitales,Daniel;  Valles,Joan;  Verloove,Filip;  Erst,Andrey S.;  Soejima,Akiko;  Mehregan,Iraj;  Kokubugata,Goro;  Chung,Gyu-Young;  Ge,Xuejun;  Gao,Lianming;  Yuan,Yuan;  Joly,Cyprien;  Jabbour,Florian;  Wang,Wei;  Shultz,Leila M.;  Gao,Tiangang
View  |  Adobe PDF(6611Kb)  |  Favorite  |  View/Download：198/16  |  Submit date：2024/05/09
Artemisia  phylogenomics  taxonomy  morphological evolution  generic delimitation  infrageneric taxonomy  genome skimming  NUCLEAR RIBOSOMAL DNA  MOLECULAR PHYLOGENY  SUBGENUS TRIDENTATAE  ALLIES ANTHEMIDEAE  ENDEMIC ARTEMISIA  TREE  L.  CLASSIFICATION  GENERA  ORIGIN  
Deciphering complex reticulate evolution of Asian Buddleja (Scrophulariaceae): insights into the taxonomy and speciation of polyploid taxa in the Sino-Himalayan region 期刊论文
ANNALS OF BOTANY, 2023
Authors:  Yang,Fengmao;  Ge,Jia;  Guo,Yongjie;  Olmstead,Richard;  Sun,Weibang
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Buddleja  phylogenomics  reticulate evolution  polyploidy  plastid genome  low-copy nuclear gene  HYBRIDIZATION  ALIGNMENT  DIVERSIFICATION  ALLOPOLYPLOIDY  PHYLOGENETICS  FRAMEWORK  NUCLEAR  ROBUST  FLOW  
New insights into intergeneric relationships of Hickeliinae (Poaceae: Bambusoideae) revealed by complete plastid genomes 期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 125-132
Authors:  Rakotonasolo,Rivontsoa A.;  Dransfield,Soejatmi;  Haevermans,Thomas;  Ralimanana,Helene;  Vorontsova,Maria S.;  Zhou,Meng-Yuan;  Li,De-Zhu
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Bamboo  Hickeliinae  Madagascar  Paleotropical  Phylogenomics  Plastome  WOODY BAMBOOS  PHYLOGENETIC ANALYSIS  MADAGASCAR  DIVERSIFICATION  CLASSIFICATION  TEMPERATE  SEQUENCES  TOOLS  
Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1125107
Authors:  Tyszka,Alexa S.;  Bretz,Eric C.;  Robertson,Holly M.;  Woodcock-Girard,Miles D.;  Ramanauskas,Karolis;  Larson,Drew A.;  Stull,Gregory W.;  Walker,Joseph F.
View  |  Adobe PDF(854Kb)  |  Favorite  |  View/Download：120/22  |  Submit date：2024/05/09
phylogenetics  plastome  mitochondrial genome  chloroplast genome  phylogenomics  combinability  phylogenetic conflict  MITOCHONDRIAL GENOMES  PENALIZED LIKELIHOOD  NUCLEOTIDE-SEQUENCES  EXTANT GYMNOSPERMS  DYNAMIC EVOLUTION  CHLOROPLAST DNA  SEED PLANTS  GENE  RATES  RECOMBINATION  
Editorial: Rise to the challenges in plastome phylogenomics 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1200302
Authors:  Dong,Wenpan;  Gao,Lianming;  Xu,Chao;  Song,Yu;  Poczai,Peter
View  |  Adobe PDF(272Kb)  |  Favorite  |  View/Download：102/17  |  Submit date：2024/05/09
plastome phylogenomics  incomplete lineage sorting  introgression  species tree  phylogenetic discordance