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Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms 期刊论文
nature plants, 2021
Authors:  Gregory W. Stull
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Complete chloroplast genome sequences of two Alloteropsis species (Poaceae) from China 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 卷号: 6, 期号: 2, 页码: 365-367
Authors:  Yang,Yang;  Zhang,Xianzhi;  Chen,Siyun;  Guo,Zhenhua;  Wang,Li
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Alloteropsis  chloroplast genome  C4 photosynthesis  phylogenomics  
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae 期刊论文
MOLECULAR PLANT, 2021, 卷号: 14, 期号: 5, 页码: 748-773
Authors:  Zhao,Yiyong;  Zhang,Rong;  Jiang,Kai-Wen;  Qi,Ji;  Hu,Yi;  Guo,Jing;  Zhu,Renbin;  Zhang,Taikui;  Egan,Ashley N.;  Yi,Ting-Shuang;  Huang,Chien-Hsun;  Ma,Hong
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Fabaceae  Leguminosae  nuclear phylogeny  divergence times  whole-genome duplication  rhizobial nodulation  COMPARATIVE GENOMICS  PHYLOGENETIC PERSPECTIVES  EARLY DIVERSIFICATION  PENALIZED LIKELIHOOD  ANCESTRAL POLYPLOIDY  MOLECULAR EVOLUTION  LOTUS-JAPONICUS  ANALYSES REVEAL  GENE  LEGUMINOSAE  
Phylogenomic conflict coincides with rapid morphological innovation 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 卷号: 118, 期号: 19, 页码: e2023058118
Authors:  Parins-Fukuchi,Caroline;  Stull,Gregory W.;  Smith,Stephen A.
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phylogenomics  morphological evolution  gene-tree discordance  tempo and mode  molecular evolution  GENE TREE DISCORDANCE  FOSSIL FLOWERS  SEED PLANTS  CARYOPHYLLALES  EVOLUTION  ORIGIN  ANCIENT  ROOT  LIFE  DIVERSIFICATION  
Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1183-1197
Authors:  Ye,Xia-Ying;  Ma,Peng-Fei;  Guo,Cen;  Li,De-Zhu
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plastome  ddRAD  Fargesia  phylogenetic incongruence  reticulate evolution  Yushania  CONFLICTING GENE TREES  BAMBOOS POACEAE  ARUNDINARIEAE POACEAE  PHYLOGENETIC-RELATIONSHIPS  MORPHOLOGICAL EVOLUTION  BALANCING SELECTION  THAMNOCALAMUS GROUP  ALLIES GRAMINEAE  RADSEQ DATA  GBSSI GENE  
Morphological and Phylogenetic Appraisal of Novel and Extant Taxa of Stictidaceae from Northern Thailand 期刊论文
JOURNAL OF FUNGI, 2021, 卷号: 7, 期号: 10, 页码: 880
Authors:  Wei,De-Ping;  Wanasinghe,Dhanushka N.;  Gentekaki,Eleni;  Thiyagaraja,Vinodhini;  Lumyong,Saisamorn;  Hyde,Kevin D.
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lichenization  new species  non-lichenized fungi  Ostropales  phylogeny  taxonomy  LICHENICOLOUS FUNGI  ASCOMYCOTA  OSTROPALES  STICTIS  PLACEMENT  KEY  ODONTOTREMATACEAE  CLASSIFICATION  ABSCONDITELLA  COMBINATIONS  
Comprehensive Review of Tolypocladium and Description of a Novel Lineage from Southwest China 期刊论文
PATHOGENS, 2021, 卷号: 10, 期号: 11, 页码: 1389
Authors:  Yu,Feng-Ming;  Thilini Chethana,Kandawatte Wedaralalage;  Wei,De-Ping;  Liu,Jian-Wei;  Zhao,Qi;  Tang,Song-Ming;  Li,Lu;  Hyde,Kevin David
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new taxon  diversity  ecology  host shift  multi-gene  mycoparasite  taxonomic key  SP-NOV  PHYLOGENETIC-RELATIONSHIPS  CORDYCEPS  FUNGI  DIVERSIFICATION  PERFORMANCE  EVOLUTION  PATHOGEN  NUCLEAR  SOIL  
Deciphering the Taxonomic Delimitation of Ottelia acuminata (Hydrocharitaceae) Using Complete Plastomes as Super-Barcodes 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12, 页码: 681270
Authors:  Ji,Yunheng;  Yang,Jin;  Landis,Jacob B.;  Wang,Shuying;  Yang,Zhenyan;  Zhang,Yonghong
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species boundary  molecular identification  DNA barcoding  taxonomy  threatened species  aquatic plant  SPECIES DELIMITATION  DNA BARCODES  MACROPHYTE DECLINE  CONSERVATION  GENOMES  BIODIVERSITY  GENETICS  MODEL  LAKES  SPP.  
The complete plastomes of two flowering epiparasites (Phacellaria glomerata and P. compressa): Gene content, organization, and plastome degradation 期刊论文
GENOMICS, 2021, 卷号: 113, 期号: 2, 页码: 447-455
Authors:  Guo,Xiaorong;  Liu,Changkun;  Wang,Hengchang;  Zhang,Guangfei;  Yan,Hanjing;  Jin,Lei;  Su,Wenhua;  Ji,Yunheng
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Amphorogynaceae  Gene loss  Mistletoe  Pseudogenization  Taxonomy  Santalales  
Plastome phylogenomics of the East Asian endemic genus Dobinea 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 1, 页码: 35-42
Authors:  Liu,Changkun;  Yang,Jin;  Jin,Lei;  Wang,Shuying;  Yang,Zhenyan;  Ji,Yunheng
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Neo-endemism  Divergence  Dobinea delavayi  Dobinea vulgaris  Dobineeae  Anacardiaceae  QUANTITATIVE RECONSTRUCTION  MOLECULAR PHYLOGENETICS  EVOLUTIONARY HISTORY  CHLOROPLAST GENOME  SAPINDALES  MONSOON  NUCLEAR  CHINA  DIVERSIFICATION  ANACARDIACEAE