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Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia 期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 147-155
Authors:  Lv,Shi-Yu;  Ye,Xia-Ying;  Li,Zhong-Hu;  Ma,Peng-Fei;  Li,De-Zhu
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Fargesia  Genome-skimming  DNA barcoding  Plastome  Ribosomal DNA  WHOLE CHLOROPLAST GENOMES  RNA-SEQ DATA  ARUNDINARIEAE POACEAE  BAMBUSOIDEAE  TEMPERATE  PLATFORM  
Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change 期刊论文
MOLECULAR ECOLOGY, 2023, 卷号: 32, 期号: 11, 页码: 2850-2868
Authors:  Qin,Sheng-Yuan;  Zuo,Zheng-Yu;  Guo,Cen;  Du,Xin-Yu;  Liu,Shui-Yin;  Yu,Xiang-Qin;  Xiang,Xiao-Guo;  Rong,Jun;  Liu,Bing;  Liu,Zhi-Fang;  Ma,Peng-Fei;  Li,De-Zhu
View  |  Adobe PDF(12802Kb)  |  Favorite  |  View/Download:1/1  |  Submit date:2024/07/10
East Asian monsoon  evergreen broadleaved forests  genome resequencing  Lauraceae  Litsea complex  single-nucleotide variants  SOUTHERN CHINA EVIDENCE  NORTHERN-HEMISPHERE  MOLECULAR PHYLOGENY  SPECIES RICHNESS  LITSEA COMPLEX  R PACKAGE  LAURACEAE  EOCENE  TERTIARY  BIOGEOGRAPHY  
Continuous genetic adaptation to high elevations of alpine bamboos in the Hengduan Mountains, Southwest China 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
Authors:  Luo,Li-Ying;  Jin,Gui-Hua;  Ma,Peng-Fei;  Li,De-Zhu
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alpine bamboos  continuum evolution  Hengduan Mountains  high-elevation adaptation  transcriptome  HIGH-ALTITUDE ADAPTATION  PHYLOGENETIC ANALYSIS  EVOLUTION  DUPLICATIONS  GENERATION  POLYPLOIDY  SELECTION  
Metabolomics reveals the role of PPAR alpha in Tripterygium Wilfordii-induced liver injury 期刊论文
JOURNAL OF ETHNOPHARMACOLOGY, 2022, 卷号: 289, 页码: 16
Authors:  Dai, Manyun;  Peng, Wan;  Zhang, Ting;  Zhao, Qi;  Ma, Xiaofang;  Cheng, Yan;  Wang, Chunyan;  Li, Fei
Favorite  |  View/Download:302/0  |  Submit date:2022/07/15
Tripterygium wilfordii  Liver injury  PPAR alpha  IL6-STAT3  Metabolomics  
Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos 期刊论文
PLANTA, 2022, 卷号: 256, 期号: 3, 页码: 53
Authors:  Niu, Liang-Zhong;  Xu, Wei;  Ma, Peng-Fei;  Guo, Zhen-Hua;  Li, De-Zhu
View  |  Adobe PDF(3169Kb)  |  Favorite  |  View/Download:35/5  |  Submit date:2024/04/30
DNA methylation  Gene expression  Internode elongation  Jasmonic acid  Woody bamboos  PHENYLALANINE AMMONIA-LYASE  MOLECULAR CHARACTERIZATION  CYTOSINE METHYLTRANSFERASE  INTERNODE ELONGATION  TRANSCRIPTION FACTOR  H3 LYSINE-9  ARABIDOPSIS  EXPRESSION  DEMETHYLATION  PROTEIN  
Plastid phylogenomics shed light on intergeneric relationships and spatiotemporal evolutionary history of Melocanninae (Poaceae: Bambusoideae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 3, 页码: 640-652
Authors:  Zhou, Meng-Yuan;  Liu, Jing-Xia;  Ma, Peng-Fei;  Yang, Jun-Bo;  Li, De-Zhu
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New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 12, 页码: 5752-5768
Authors:  Jin,Guihua;  Ma,Peng-Fei;  Wu,Xiaopei;  Gu,Lianfeng;  Long,Manyuan;  Zhang,Chengjun;  Li,De-Zhu
Favorite  |  View/Download:127/0  |  Submit date:2022/04/02
fast stem growth  orphan genes  de novo genes  WGD  woody bamboos  evolutionary innovation  EVOLUTIONARY ORIGIN  DROSOPHILA-MELANOGASTER  PHYLOGENETIC ANALYSIS  VERTEBRATE EVOLUTION  RAPID EVOLUTION  HUMAN TISSUE  YOUNG GENES  TRANSCRIPTION  EXPRESSION  HOURGLASS  
Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1183-1197
Authors:  Ye,Xia-Ying;  Ma,Peng-Fei;  Guo,Cen;  Li,De-Zhu
Favorite  |  View/Download:72/0  |  Submit date:2022/04/02
plastome  ddRAD  Fargesia  phylogenetic incongruence  reticulate evolution  Yushania  CONFLICTING GENE TREES  BAMBOOS POACEAE  ARUNDINARIEAE POACEAE  PHYLOGENETIC-RELATIONSHIPS  MORPHOLOGICAL EVOLUTION  BALANCING SELECTION  THAMNOCALAMUS GROUP  ALLIES GRAMINEAE  RADSEQ DATA  GBSSI GENE  
A nonS-locus F-box gene breaks self-incompatibility in diploid potatoes 期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 4142
Authors:  Ma,Ling;  Zhang,Chunzhi;  Zhang,Bo;  Tang,Fei;  Li,Futing;  Liao,Qinggang;  Tang,Die;  Peng,Zhen;  Jia,Yuxin;  Gao,Meng;  Guo,Han;  Zhang,Jinzhe;  Luo,Xuming;  Yang,Huiqin;  Gao,Dongli;  Lucas,William J.;  Li,Canhui;  Huang,Sanwen;  Shang,Yi
Favorite  |  View/Download:72/0  |  Submit date:2022/04/02
SPECIES SOLANUM-CHACOENSE  INHIBITOR SLI GENE  NICOTIANA-ALATA  INBRED LINE  COMPATIBILITY  
Identification of a Novel TAR RNA-Binding Protein 2 Modulator with Potential Therapeutic Activity against Hepatocellular Carcinoma 期刊论文
JOURNAL OF MEDICINAL CHEMISTRY, 2021, 卷号: 64, 期号: 11, 页码: 7404-7421
Authors:  Zhou,Zongyuan;  Li,Yiming;  Ma,Xiaofang;  Cao,Biyun;  Peng,Ting;  Sheng,Yuwen;  Peng,Huipan;  Li,Runze;  Cao,Yu;  Xi,Ruiying;  Li,Fu;  Wang,Mengru;  Sun,Handong;  Zhang,Guolin;  Zhang,Hongbin;  Hu,Kaifeng;  Xiao,Weilie;  Wang,Fei
Favorite  |  View/Download:101/0  |  Submit date:2022/04/02
GOMISIN-A  DIBENZOCYCLOOCTADIENE LIGNANS  SCHISANDRA-CHINENSIS  MASS-SPECTROMETRY  MIRNA EXPRESSION  DOWN-REGULATION  NONCODING RNA  MICRORNA  LIVER  DICER