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Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae 期刊论文
ANNALS OF BOTANY, 2022
Authors:  Zhao, Lei;  Yang, Ying-Ying;  Qu, Xiao-Jian;  Ma, Hong;  Hu, Yi;  Li, Hong-Tao;  Yi, Ting-Shuang;  Li, De-Zhu
View  |  Adobe PDF(1678Kb)  |  Favorite  |  View/Download:140/24  |  Submit date:2024/04/30
Araceae  diversification  phylogenomics  WGDs  adaptation  TRAIT-DEPENDENT SPECIATION  GENE DUPLICATION  ANGIOSPERM DIVERSIFICATION  PHYLOGENOMIC ANALYSES  NUCLEAR GENES  POLYPLOIDY  EVOLUTIONARY  FAMILY  RATES  TOOL  
Phylogenomics and the flowering plant tree of life 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022
Authors:  Guo, Cen;  Luo, Yang;  Gao, Lian-Ming;  Yi, Ting-Shuang;  Li, Hong-Tao;  Yang, Jun-Bo;  Li, De-Zhu
View  |  Adobe PDF(1181Kb)  |  Favorite  |  View/Download:188/24  |  Submit date:2024/08/21
angiosperms  hybridization  incomplete lineage sorting  orthology inference  phylogenetic conflicts  reduced representation sequencing  whole-genome sequencing  whole-genome duplication  SYSTEMATIC-ERRORS  RNA-SEQ  SEQUENCE CAPTURE  SEED PLANTS  DATA SETS  GENOME  EVOLUTION  RADSEQ  TOOL  CLASSIFICATION  
The patterns of vascular plant discoveries in China 期刊论文
ECOLOGY AND EVOLUTION, 2021, 卷号: 11, 期号: 18, 页码: 12378-12388
Authors:  Lu,Muyang;  Gao,Lianming;  Li,Hongtao;  He,Fangliang
View  |  Adobe PDF(700Kb)  |  Favorite  |  View/Download:177/36  |  Submit date:2022/04/02
biodiversity hot spots  botanical discovery  conservation prioritization  Flora of China  species accumulation curve  survival analysis  taxonomic efforts  SPECIES RICHNESS  BIODIVERSITY  DETERMINES  CONSERVATION  SHORTFALLS  DIVERSITY  KNOWLEDGE  AMERICAN  INSECTS  SHARKS  
Origin of angiosperms and the puzzle of the Jurassic gap 期刊论文
NATURE PLANTS, 2019, 卷号: 5, 期号: 5, 页码: 461-470
Authors:  Li, Hong-Tao;  Yi, Ting-Shuang;  Gao, Lian-Ming;  Ma, Peng-Fei;  Zhang, Ting;  Yang, Jun-Bo;  Gitzendanner, Matthew A.;  Fritsch, Peter W.;  Cai, Jie;  Luo, Yang;  Wang, Hong;  van der Bank, Michelle;  Zhang, Shu-Dong;  Wang, Qing-Feng;  Wang, Jian;  Zhang, Zhi-Rong;  Fu, Chao-Nan;  Yang, Jing;  Hollingsworth, Peter M.;  Chase, Mark W.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Li, De-Zhu
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Plastid phylogenomic insights into the evolution of Caryophyllales 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 卷号: 134, 页码: 74-86
Authors:  Yao, Gang;  Jin, Jian-Jun;  Li, Hong-Tao;  Yang, Jun-Bo;  Mandala, Venkata Shiva;  Croley, Matthew;  Mostow, Rebecca;  Douglas, Norman A.;  Chase, Mark W.;  Christenhusz, Maarten J. M.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Smith, Stephen A.;  Brockington, Samuel F.;  Moore, Michael J.;  Yi, Ting-Shuang;  Li, De-Zhu
View  |  Adobe PDF(4374Kb)  |  Favorite  |  View/Download:378/53  |  Submit date:2019/04/15
Caryophyllales  Gene loss  Molecular dating  Phylogenomics  Plastome  Rapid radiation  Substitution rate  
一种基于大规模基因树的物种树构建方法 专利
申请日期: 2018-10-09, 公开日期: 2019-03-01
Inventors:  赵磊;  李洪涛;  李德铢
Favorite  |  View/Download:342/0  |  Submit date:2019/08/14
一种基于二代测序的植物叶绿体全基因组组装成环方法 专利
申请日期: 2018-10-09, 公开日期: 2019-03-01
Inventors:  赵磊;  李洪涛;  李德铢
Favorite  |  View/Download:270/0  |  Submit date:2019/08/14
Comparative Analysis of the Complete Chloroplast Genomes of Four Aconitum Medicinal Species 期刊论文
MOLECULES, 2018, 卷号: 23, 期号: 5, 页码: 1015
Authors:  Meng, Jing;  Li, Xuepei;  Li, Hongtao;  Yang, Junbo;  Wang, Hong;  He, Jun
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Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution 期刊论文
BMC GENOMICS, 2017, 卷号: 18, 页码: 956
Authors:  Fu, Chao-Nan;  Li, Hong-Tao;  Milne, Richard;  Zhang, Ting;  Ma, Peng-Fei;  Yang, Jing;  Li, De-Zhu;  Gao, Lian-Ming
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Plastid Genome  Phylogenomics  Cornales  Alignment  Partitioning Schemes  Gene Loss  
Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics 期刊论文
NEW PHYTOLOGIST, 2017, 卷号: 214, 期号: 3, 页码: 1355-1367
Authors:  Zhang, Shu-Dong;  Jin, Jian-Jun;  Chen, Si-Yun;  Chase, Mark W.;  Soltis, Douglas E.;  Li, Hong-Tao;  Yang, Jun-Bo;  Li, De-Zhu;  Yi, Ting-Shuang
View  |  Adobe PDF(1116Kb)  |  Favorite  |  View/Download:584/138  |  Submit date:2017/07/10
Diversification  Phylogenomics  Plastome  Rapid Radiation  Rosaceae  Systematic Error