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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes 期刊论文
GENOME BIOLOGY, 2020
作者:  Jin, Jian-Jun;  Yu, Wen-Bin;  Yang, Jun-Bo;  Song, Yu;  dePamphilis, Claude W.;  Yi, Ting-Shuang;  Li, De-Zhu
浏览  |  Adobe PDF(1951Kb)  |  收藏  |  浏览/下载：222/18  |  提交时间：2021/01/05
Plastome phylogenomics, biogeography, and clade diversification of Paris (Melanthiaceae) 期刊论文
BMC PLANT BIOLOGY, 2019, 卷号: 19, 期号: 1, 页码: 14
作者:  Ji, Yunheng;  Yang, Lifang;  Chase, Mark W.;  Liu, Changkun;  Yang, Zhenyan;  Yang, Jin;  Yang, Jun-Bo;  Yi, Ting-Shuang
浏览  |  Adobe PDF(3013Kb)  |  收藏  |  浏览/下载：179/42  |  提交时间：2020/03/18
Plastid phylogenomics  Biogeography  Radiative diversification  Cytonuclear discordance  Large genome size  Parideae  Paris  Melanthiaceae  Trilliaceae  
Origin of angiosperms and the puzzle of the Jurassic gap 期刊论文
NATURE PLANTS, 2019, 卷号: 5, 期号: 5, 页码: 461-470
作者:  Li, Hong-Tao;  Yi, Ting-Shuang;  Gao, Lian-Ming;  Ma, Peng-Fei;  Zhang, Ting;  Yang, Jun-Bo;  Gitzendanner, Matthew A.;  Fritsch, Peter W.;  Cai, Jie;  Luo, Yang;  Wang, Hong;  van der Bank, Michelle;  Zhang, Shu-Dong;  Wang, Qing-Feng;  Wang, Jian;  Zhang, Zhi-Rong;  Fu, Chao-Nan;  Yang, Jing;  Hollingsworth, Peter M.;  Chase, Mark W.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Li, De-Zhu
浏览  |  Adobe PDF(1707Kb)  |  收藏  |  浏览/下载：359/60  |  提交时间：2019/07/29
Plastid phylogenomic insights into the evolution of Caryophyllales 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 卷号: 134, 页码: 74-86
作者:  Yao, Gang;  Jin, Jian-Jun;  Li, Hong-Tao;  Yang, Jun-Bo;  Mandala, Venkata Shiva;  Croley, Matthew;  Mostow, Rebecca;  Douglas, Norman A.;  Chase, Mark W.;  Christenhusz, Maarten J. M.;  Soltis, Douglas E.;  Soltis, Pamela S.;  Smith, Stephen A.;  Brockington, Samuel F.;  Moore, Michael J.;  Yi, Ting-Shuang;  Li, De-Zhu
浏览  |  Adobe PDF(4374Kb)  |  收藏  |  浏览/下载：258/31  |  提交时间：2019/04/15
Caryophyllales  Gene loss  Molecular dating  Phylogenomics  Plastome  Rapid radiation  Substitution rate  
Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication 期刊论文
TREE GENETICS & GENOMES, 2017, 卷号: 13, 期号: 2, 页码: 41
作者:  Wang, Yin-Huan;  Qu, Xiao-Jian;  Chen, Si-Yun;  Li, De-Zhu;  Yi, Ting-Shuang
浏览  |  Adobe PDF(5516Kb)  |  收藏  |  浏览/下载：211/31  |  提交时间：2017/07/10
Plastome  Ir Expansion/contraction  Repeats  Mimosoideae  Sequence Divergence  Phylogenomics  
A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny 期刊论文
TAXON, 2017, 卷号: 66, 期号: 1, 页码: 44-77
作者:  Azani, Nasim;  Babineau, Marielle;  Bailey, C. Donovan;  Banks, Hannah;  Barbosa, Ariane R.;  Pinto, Rafael Barbosa;  Boatwright, James S.;  Borges, Leonardo M.;  Brown, Gillian K.;  Bruneau, Anne;  Candido, Elisa;  Cardoso, Domingos;  Chung, Kuo-Fang;  Clark, Ruth P.;  Conceicao, Adilva de S.;  Crisp, Michael;  Cubas, Paloma;  Delgado-Salinas, Alfonso;  Dexter, Kyle G.;  Doyle, Jeff J.;  Duminil, Jerome;  Egan, Ashley N.;  de la Estrella, Manuel;  Falcao, Marcus J.;  Filatov, Dmitry A.;  Fortuna-Perez, Ana Paula;  Fortunato, Renee H.;  Gagnon, Edeline;  Gasson, Peter;  Rando, Juliana Gastaldello;  Goulart de Azevedo Tozzi, Ana Maria;  Gunn, Bee;  Harris, David;  Haston, Elspeth;  Hawkins, Julie A.;  Herendeen, Patrick S.;  Hughes, Colin E.;  Iganci, Joao R. V.;  Javadi, Firouzeh;  Kanu, Sheku Alfred;  Kazempour-Osaloo, Shahrokh;  Kite, Geoffrey C.;  Klitgaard, Bente B.;  Kochanovski, Fabio J.;  Koenen, Erik J. M.;  Kovar, Lynsey;  Lavin, Matt;  le Roux, Marianne;  Lewis, Gwilym P.;  de Lima, Haroldo C.;  Lopez-Roberts, Maria Cristina;  Mackinder, Barbara;  Maia, Vitor Hugo;  Malecot, Valery;  Mansano, Vidal F.;  Marazzi, Brigitte;  Mattapha, Sawai;  Miller, Joseph T.;  Mitsuyuki, Chika;  Moura, Tania;  Murphy, Daniel J.;  Nageswara-Rao, Madhugiri;  Nevado, Bruno;  Neves, Danilo;  Ojeda, Dario I.;  Pennington, R. Toby;  Prado, Darirn E.;  Prenner, Gerhard;  de Queiroz, Luciano Paganucci;  Ramos, Gustavo;  Ranzato Filardi, Fabiana L.;  Ribeiro, Petala G.;  Rico-Arce, Maria de Lourdes;  Sanderson, Michael J.;  Santos-Silva, Juliana;  Sao-Mateus, Wallace M. B.;  Silva, Marcos J. S.;  Simon, Marcelo F.;  Sinou, Carole;  Snak, Cristiane;  de Souza, Elvia R.;  Sprent, Janet;  Steele, Kelly P.;  Steier, Julia E.;  Steeves, Royce;  Stirton, Charles H.;  Tagane, Shuichiro;  Torke, Benjamin M.;  Toyama, Hironori;  da Cruz, Daiane Trabuco;  Vatanparast, Mohammad;  Wieringa, Jan J.;  Wink, Michael;  Wojciechowski, Martin F.;  Yahara, Tetsukazu;  Yi, Tingshuang;  Zimmerman, Erin
浏览  |  Adobe PDF(23142Kb)  |  收藏  |  浏览/下载：505/72  |  提交时间：2017/03/07
Caesalpinioideae  Cercidoideae  Detarioideae  Dialioideae  Duparquetioideae  Mimosoid Clade  Papilionoideae  Plastid Matk Phylogeny  
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 卷号: 34, 期号: 2, 页码: 262-281
作者:  Xiang,Yezi;  Huang,Chien-Hsun;  Hu,Yi;  Wen,Jun;  Li,Shisheng;  Yi,Tingshuang;  Chen,Hongyi;  Xiang,Jun;  Ma,Hong
浏览  |  Adobe PDF(5900Kb)  |  收藏  |  浏览/下载：240/50  |  提交时间：2017/10/23
Northeastern Washington-state  Sequence Data  Molecular Phylogenetics  British-columbia  Divergence Times  Prunus Rosaceae  Ribosomal Dna  Early Eocene  Gene Data  Polyploidy  Coalescence  Fruit Evolution  Molecular Clock  Nuclear Phylogeny  Rosaceae  Genome Duplication  
Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 卷号: 105, 期号: 1, 页码: 166-176
作者:  Zhao, Lei;  Li, Xia;  Zhang, Ning;  Zhang, Shu-Dong;  Yi, Ting-Shuang;  Ma, Hong;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(2059Kb)  |  收藏  |  浏览/下载：358/65  |  提交时间：2016/12/21
Coalescence  Rosids Phylogenomics  Nuclear Genes  Gene Tree  Species Tree  
Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 10, 页码: e0078568
作者:  Li, Rong;  Ma, Peng-Fei;  Wen, Jun;  Yi, Ting-Shuang
浏览  |  Adobe PDF(2946Kb)  |  收藏  |  浏览/下载：320/86  |  提交时间：2014/01/13
Complete Nucleotide-sequence  Plastid Genomes  Maximum-likelihood  Scale Data  Evolution  Dna  Genes  Mitochondrial  Angiosperms  Nuclear  
Evolution and biogeographic diversification of the witch-hazel genus (Hamamelis L., Hamamelidaceae) in the Northern Hemisphere 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2010, 卷号: 56, 期号: 2, 页码: 675-689
作者:  Xie, Lei;  Yi, Ting-Shuang;  Li, Rong;  Li, De-Zhu;  Wen, Jun
浏览  |  Adobe PDF(1824Kb)  |  收藏  |  浏览/下载：258/96  |  提交时间：2015/08/17
Hamamelidaceae  Hamamelis  Biogeography  Trnl-f  Psaa-ycf3  Rps16  Matk  Arpb-rbcl  Psba-trnh  Its  Ets  Phylogeny  Disjunct Distribution  Fossils