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Telomere-to-telomere and haplotype-resolved genome assembly of the Chinese cork oak (Quercus variabilis) 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1290913
Authors:  Wang,Longxin;  Li,Lei-Lei;  Chen,Li;  Zhang,Ren-Gang;  Zhao,Shi-Wei;  Yan,Han;  Gao,Jie;  Chen,Xue;  Si,Yu-Jun;  Chen,Zhe;  Liu,Haibo;  Xie,Xiao-Man;  Zhao,Wei;  Han,Biao;  Qin,Xiaochun;  Jia,Kai-Hua
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Quercus variabilis  genome assembly  telomere-to-telomere  gap-less  haplotype-resolved  PROGRAM  PROTEIN  TRANSCRIPTOME  ALIGNMENTS  PROVIDES  SYSTEM  
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 2, 页码: 341-351
Authors:  Jin,Gui-Hua;  Zhou,Yan-Li;  Yang,Hong;  Hu,Yan-Ting;  Shi,Yong;  Li,Ling;  Siddique,Abu N.;  Liu,Chang-Ning;  Zhu,An-Dan;  Zhang,Cheng-Jun;  Li,De-Zhu
Favorite  |  View/Download:76/0  |  Submit date:2022/04/02
comparative genomics  origin  orphan gene  transposable element  LINEAGE-SPECIFIC GENES  EVOLUTION  ORIGIN  IDENTIFICATION  EMERGENCE  PROTEIN  DUPLICATION  ALIGNMENT  SETS  
Fungal diversity notes 1151-1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa 期刊论文
FUNGAL DIVERSITY, 2020
Authors:  Hyde, Kevin D.;  Dong, Yang;  Phookamsak, Rungtiwa;  Jeewon, Rajesh;  Bhat, D. Jayarama;  Jones, E. B. Gareth;  Liu, Ning-Guo;  Abeywickrama, Pranami D.;  Mapook, Ausana;  Wei, Deping;  Perera, Rekhani H.;  Manawasinghe, Ishara S.;  Pem, Dhandevi;  Bundhun, Digvijayini;  Karunarathna, Anuruddha;  Ekanayaka, Anusha H.;  Bao, Dan-Feng;  Li, Junfu;  Samarakoon, Milan C.;  Chaiwan, Napalai;  Lin, Chuan-Gen;  Phutthacharoen, Kunthida;  Zhang, Sheng-Nan;  Senanayake, Indunil C.;  Goonasekara, Ishani D.;  Thambugala, Kasun M.;  Phukhamsakda, Chayanard;  Tennakoon, Danushka S.;  Jiang, Hong-Bo;  Yang, Jing;  Zeng, Ming;  Huanraluek, Naruemon;  Liu, Jian-Kui (Jack);  Wijesinghe, Subodini N.;  Tian, Qing;  Tibpromma, Saowaluck;  Brahmanage, Rashika S.;  Boonmee, Saranyaphat;  Huang, Shi-Ke;  Thiyagaraja, Vinodhini;  Lu, Yong-Zhong;  Jayawardena, Ruvishika S.;  Dong, Wei;  Yang, Er-Fu;  Singh, Sanjay K.;  Singh, Shiv Mohan;  Rana, Shiwali;  Lad, Sneha S.;  Anand, Garima;  Devadatha, Bandarupalli;  Niranjan, M.;  Sarma, V. Venkateswara;  Liimatainen, Kare;  Aguirre-Hudson, Begona;  Niskanen, Tuula;  Overall, Andy;  Alvarenga, Renato Lucio Mendes;  Gibertoni, Tatiana Baptista;  Pfliegler, Walter P.;  Horvath, Eniko;  Imre, Alexandra;  Alves, Amanda Lucia;  Santos, Ana Carla da Silva;  Tiago, Patricia Vieira;  Bulgakov, Timur S.;  Wanasinghe, Dhanushaka N.;  Bahkali, Ali H.;  Doilom, Mingkwan;  Elgorban, Abdallah M.;  Maharachchikumbura, Sajeewa S. N.;  Rajeshkumar, Kunhiraman C.;  Haelewaters, Danny;  Mortimer, Peter E.;  Zhao, Qi;  Lumyong, Saisamorn;  Xu, Jianchu;  Sheng, Jun
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Draft genomes of two outcrossing wild rice,Oryza rufipogonandO. longistaminata, reveal genomic features associated with mating-system evolution 期刊论文
PLANT DIRECT, 2020
Authors:  Li, Wei;  Zhang, Qun-Jie;  Zhu, Ting;  Tong, Yan;  Li, Kui;  Shi, Cong;  Zhang, Yun;  Liu, Yun-Long;  Jiang, Jian-Jun;  Liu, Yuan;  Xia, En-Hua;  Huang, Hui;  Zhang, Li-Ping;  Zhang, Dan;  Shi, Chao;  Jiang, Wen-Kai;  Zhao, You-Jie;  Mao, Shu-Yan;  Jiao, Jun-ying;  Xu, Ping-Zhen;  Yang, Li-Li;  Gao, Li-Zhi
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Improved hybrid de novo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads 期刊论文
PLANT GENOME, 2020
Authors:  Li, Wei;  Li, Kui;  Zhang, Qun-jie;  Zhu, Ting;  Zhang, Yun;  Shi, Cong;  Liu, Yun-long;  Xia, En-hua;  Jiang, Jian-jun;  Shi, Chao;  Zhang, Li-ping;  Huang, Hui;  Tong, Yan;  Liu, Yuan;  Zhang, Dan;  Zhao, Yuan;  Jiang, Wen-kai;  Zhao, You-jie;  Mao, Shu-yan;  Jiao, Jun-ying;  Xu, Ping-zhen;  Yang, Li-li;  Yin, Guo-ying;  Gao, Li-zhi
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Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 页码: 11
Authors:  Jin, Gui-Hua;  Zhou, Yan-Li;  Yang, Hong;  Hu, Yan-Ting;  Shi, Yong;  Li, Ling;  Siddique, Abu N.;  Liu, Chang-Ning;  Zhu, An-Dan;  Zhang, Cheng-Jun;  Li, De-Zhu
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comparative genomics  origin  orphan gene  transposable element  
Arabidopsis thaliana Plants Engineered To Produce Astaxanthin Show Enhanced Oxidative Stress Tolerance and Bacterial Pathogen Resistance 期刊论文
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2019, 卷号: 67, 期号: 45, 页码: 12590-12598
Authors:  Yu, Lujun;  Chen, Qnfang;  Peng, Yujun;  Xie, Lijuan;  Liu, Di;  Han, Muqian;  Chen, Feng;  Xiao, Shi;  Huang, Junchao;  Li, Juan
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carotenoid  astaxanthin  oxidation  ABA  BKT  pathogen  
Surface conductance for evapotranspiration of tropical forests: Calculations, variations, and controls 期刊论文
AGRICULTURAL AND FOREST METEOROLOGY, 2019, 卷号: 275, 页码: 317-328
Authors:  Tan, Zheng-Hong;  Zhao, Jun-Fu;  Wang, Guan-Ze;  Chen, Meng-Ping;  Yang, Lian-Yan;  He, Chun-Sheng;  Restrepo-Coupe, Natalia;  Peng, Shu-Shi;  Liu, Xue-Yan;  da Rocha, Humberto R.;  Kosugi, Yoshiko;  Hirano, Takashi;  Salesk, Scott R.;  Goulden, Michael L.;  Zeng, Jiye;  Ding, Fang-Jun;  Gao, Fu;  Song, Liang
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Boundary layer conductance  Penman-Monteith equation  Maximum surface conductance  Energy imbalance correction  Jarvis stomata model  
Three new Lycopodium alkaloids from Lycopodium japonicum 期刊论文
JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH, 2019, 卷号: 21, 期号: 1, 页码: 17-24
Authors:  Zhu, Yu;  Dong, Liao-Bin;  Zhang, Zhi-Jun;  Fan, Min;  Zhu, Qin-Feng;  Qi, Yan-Yan;  Liu, Yu-Chen;  Peng, Li-Yan;  Wu, Xing-De;  Zhao, Qin-Shi
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Lycopodiaceae  Lycopodium japonicum  Lycopodium alkaloids  T-type calcium channel  
Evolution of Oryza chloroplast genomes promoted adaptation to diverse ecological habitats 期刊论文
COMMUNICATIONS BIOLOGY, 2019, 卷号: 2, 页码: UNSP 278
Authors:  Gao,Li-Zhi;  Liu,Yun-Long;  Zhang,Dan;  Li,Wei;  Gao,Ju;  Liu,Yuan;  Li,Kui;  Shi,Chao;  Zhao,Yuan;  Zhao,You-Jie;  Jiao,Jun-Ying;  Mao,Shu-Yan;  Gao,Cheng-Wen;  Eichler,Evan E.
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