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Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 页码: 11
作者:  Jin, Gui-Hua;  Zhou, Yan-Li;  Yang, Hong;  Hu, Yan-Ting;  Shi, Yong;  Li, Ling;  Siddique, Abu N.;  Liu, Chang-Ning;  Zhu, An-Dan;  Zhang, Cheng-Jun;  Li, De-Zhu
浏览  |  Adobe PDF(845Kb)  |  收藏  |  浏览/下载：316/113  |  提交时间：2020/03/17
comparative genomics  origin  orphan gene  transposable element  
Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos 期刊论文
MOLECULAR PLANT, 2019, 卷号: 12, 期号: 10, 页码: 1353-1365
作者:  Guo, Zhen-Hua;  Ma, Peng-Fei;  Yang, Guo-Qian;  Hu, Jin-Yong;  Liu, Yun-Long;  Xia, En-Hua;  Zhong, Mi-Cai;  Zhao, Lei;  Sun, Gui-Ling;  Xu, Yu-Xing;  Zhao, You-Jie;  Zhang, Yi-Chi;  Zhang, Yu-Xiao;  Zhang, Xue-Mei;  Zhou, Meng-Yuan;  Guo, Ying;  Guo, Cen;  Liu, Jing-Xia;  Ye, Xia-Ying;  Chen, Yun-Mei;  Yang, Yang;  Hang, Bin;  Lin, Choun-Sea;  Lu, Ying;  Li, De-Zhu
浏览  |  Adobe PDF(1655Kb)  |  收藏  |  浏览/下载：400/77  |  提交时间：2019/12/20
Bambusoideae  polyploidization  comparative genomics  subgenome evolution  flowering  
Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 卷号: 105, 期号: 1, 页码: 166-176
作者:  Zhao, Lei;  Li, Xia;  Zhang, Ning;  Zhang, Shu-Dong;  Yi, Ting-Shuang;  Ma, Hong;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(2059Kb)  |  收藏  |  浏览/下载：393/84  |  提交时间：2016/12/21
Coalescence  Rosids Phylogenomics  Nuclear Genes  Gene Tree  Species Tree  
Genomic DNA Methylation Analyses Reveal the Distinct Profiles in Castor Bean Seeds with Persistent Endosperms 期刊论文
PLANT PHYSIOLOGY, 2016, 卷号: 171, 期号: 2, 页码: 1242-1258
作者:  Xu, Wei;  Yang, Tianquan;  Dong, Xue;  Li, De-Zhu;  Liu, Aizhong
浏览  |  Adobe PDF(2909Kb)  |  收藏  |  浏览/下载：324/70  |  提交时间：2016/10/19
Environmental and Historical Determinants of Patterns of Genetic Differentiation in Wild Soybean (Glycine soja Sieb. et Zucc) 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6
作者:  He, Shui-Lian;  Wang, Yun-Sheng;  Li, De-Zhu;  Yi, Ting-Shuang
浏览  |  Adobe PDF(1468Kb)  |  收藏  |  浏览/下载：198/59  |  提交时间：2016/06/27
Chloroplast phylogenomics resolves key relationships in ferns 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2015, 卷号: 53, 期号: 5, 页码: 448-457
作者:  Lu,Jin-Mei;  Zhang,Ning;  Du,Xin-Yu;  Wen,Jun;  Li,De-Zhu
浏览  |  Adobe PDF(676Kb)  |  收藏  |  浏览/下载：218/76  |  提交时间：2016/01/19
Chloroplast Genome  Chloroplast Phylogenomics  Ferns  Phylogenetics  Polypods  
The expression and phylogenetic analysis of four AP3-like paralogs in the stamens, carpels, and single-whorl perianth of the paleoherb Asarum caudigerum 期刊论文
MOLECULAR BIOLOGY REPORTS, 2013, 卷号: 40, 期号: 8, 页码: 4691-4699
作者:  Zhao, Yin-He;  Larson-Rabin, Zachary;  Li, De-Zhu;  Wang, Guo-Ying;  Peng, Seng;  Li, Cheng-Yun
浏览  |  Adobe PDF(791Kb)  |  收藏  |  浏览/下载：433/110  |  提交时间：2013/10/16
Asarum Caudigerum  Ap3-like  Gene Duplication  Pseudogene  Neofunctionalization  Subfunctionalization  
Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 5, 页码: e64642
作者:  Zhao, Lei;  Zhang, Ning;  Ma, Peng-Fei;  Liu, Qi;  Li, De-Zhu;  Guo, Zhen-Hua
浏览  |  Adobe PDF(1078Kb)  |  收藏  |  浏览/下载：884/251  |  提交时间：2013/07/24
Rna-recognition Motif  Translation Initiation-factor  Multiple Sequence Alignment  Protein-coding Sequences  Likelihood Ratio Tests  Grass Family Poaceae  Arabidopsis-thaliana  Adaptive Evolution  Molecular Evolution  Plant Phylogenetics  
Developmental Genetics of the Perianthless Flowers and Bracts of a Paleoherb Species, Saururus chinensis 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 1, 页码: e53019
作者:  Zhao, Yin-He;  Larson-Rabin, Zachary;  Wang, Guo-Ying;  Moeller, Michael;  Li, Cheng-Yun;  Zhang, Jin-Peng;  Li, Hong-Tao;  Li, De-Zhu
浏览  |  Adobe PDF(828Kb)  |  收藏  |  浏览/下载：455/151  |  提交时间：2013/07/24
Floral Organ Identity  Mads-box Genes  Basal Angiosperms  Homeotic Genes  Core Eudicots  Arabidopsis  Expression  Evolution  Apetala3  Pistillata  
Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA 期刊论文
PLOS ONE, 2012, 卷号: 7, 期号: 8, 页码: e43971
作者:  Song, Jingyuan;  Shi, Linchun;  Li, Dezhu;  Sun, Yongzhen;  Niu, Yunyun;  Chen, Zhiduan;  Luo, Hongmei;  Pang, Xiaohui;  Sun, Zhiying;  Liu, Chang;  Lv, Aiping;  Deng, Youping;  Larson-Rabin, Zachary;  Wilkinson, Mike;  Chen, Shilin
浏览  |  Adobe PDF(1067Kb)  |  收藏  |  浏览/下载：369/95  |  提交时间：2012/11/30
Multiple Sequence Alignment  Land Plants  Species Identification  Rna Genes  Saccharomyces-cerevisiae  Molecular Systematics  Secondary Structures  Intergenic Region  Flowering Plants  High-throughput