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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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0.05) between wild (AR = 4.651), semi-cultivated (AR = 5.091) and cultivated (AR = 5.132) populations of C. taliensis, which suggested that the genetic background of long-lived woody plant was not easy to be changed, and there were moderate high gene flow between populations. However, there was a significant difference (P < 0.05) between wild (AR = 5.9) and cultivated (AR = 7.1) populations distributed in the same place in Yun county, Yunnan province, which may result from the hybridization and introgression of species in the tea garden and anthropogenic damages to the wild population. The hypothesis of hybrid origin of C. grandibracteata was tested by morphological and microsatellites analyses. Compared with other species, the locules in ovary of C. grandibracteata are variable, which showed a morphological intermediate and mosaic. Except one private allele, Ninety-nine percent alleles of C. grandibracteata were shared with these of C. taliensis and C. sinensis var. assamica. And C. grandibracteata was nested in the cluster of C. taliensis in the UPGMA tree. Conclusively, our results supported the hypothesis of hybrid origin of C. grandibracteata partly. The speciation of C. grandibracteata was derived from hybridization and asymmetrical introgression potentially. It is possible that C. taliensis was one of its parents, but it still needs more evidences to prove that C. sinensis var. assamica was another parent.","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=Chloroplast%2BGenome&order=desc&&fq=dc.project.title_filter%3ACamellia%5C+taliensis%5C+%5C%28W.%5C+W.%5C+Smith%5C%29%5C+Melchior%2C%5C+a%5C+member%5C+of%5C+Camellia%5C+sect.%5C+Thea%2C%5C+is%5C+an%5C+indigenous%5C+species%5C+in%5C+local%5C+natural%5C+forest%5C+and%5C+has%5C+a%5C+long%5C+cultivative%5C+history%5C+in%5C+western%5C+Yunnan%5C+and%5C+its%5C+neighborhood%2C%5C+where%5C+the%5C+domestications%5C+of%5C+this%5C+species%5C+in%5C+different%5C+historical%5C+periods%5C+and%5C+in%5C+different%5C+ways%5C+can%5C+be%5C+found.%5C+C.%5C+taliensis%5C+is%5C+an%5C+important%5C+contributor%5C+to%5C+the%5C+formations%5C+of%5C+tea%5C+landraces%5C+by%5C+hybridization%5C+and%5C+introgression.%5C+In%5C+the%5C+present%5C+study%2C%5C+14%5C+microsatellite%5C+loci%5C+screened%5C+from%5C+37%5C+loci%5C+were%5C+used%5C+to%5C+explore%5C+the%5C+genetic%5C+diversity%5C+about%5C+this%5C+species%5C+with%5C+579%5C+samples%5C+from%5C+25%5C+populations%5C+%5C%2816%5C+wild%5C+populations%2C%5C+4%5C+semi%5C-cultivated%5C+populations%5C+and%5C+5%5C+cultivated%5C+populations%5C%29.%5C+At%5C+the%5C+same%5C+time%2C%5C+the%5C+potential%5C+hybrid%5C+speciation%5C+of%5C+C.%5C+grandibracteata%2C%5C+was%5C+investigated%5C+using%5C+39%5C+individuals%5C+from%5C+2%5C+populations%2C%5C+along%5C+with%5C+C.%5C+taliensis%5C+and%5C+C.%5C+sinensis%5C+var.%5C+assamica%5C+%5C%2883%5C+individuals%5C+from%5C+4%5C+populations%5C%29%5C+by%5C+the%5C+same%5C+microsatellite%5C+markers.%5C+C.%5C+taliensis%5C+had%5C+a%5C+moderate%5C+high%5C+level%5C+of%5C+genetic%5C+diversity%5C+%5C%28A%5C+%3D%5C+14.3%2C%5C+Ne%3D%5C+5.7%2C%5C+HE%5C+%3D%5C+0.666%2C%5C+I%5C+%3D%5C+1.753%2C%5C+AR%5C+%3D%5C+7.2%2C%5C+PPB%5C+%3D%5C+100%25%5C%29.%5C+This%5C+may%5C+result%5C+from%5C+several%5C+factors%5C+including%5C+K%5C-strategy%2C%5C+genetic%5C+background%2C%5C+gene%5C+flow%5C+between%5C+populations%2C%5C+hybridization%5C+and%5C+introgression%5C+among%5C+species.%5C+Between%5C+wild%5C+populations%5C+of%5C+C.%5C+taliensis%2C%5C+the%5C+gene%5C+flow%5C+was%5C+moderate%5C+high%5C+%5C%28Nm%5C+%3D%5C+1.197%5C%29%2C%5C+and%5C+genetic%5C+variation%5C+was%5C+less%5C+than%5C+20%25%5C+%5C%28GST%5C+%3D%5C+0.147%2C%5C+FST%5C+%3D%5C+0.173%5C%29%2C%5C+which%5C+was%5C+similar%5C+to%5C+other%5C+research%5C+results%5C+of%5C+long%5C-lived%5C+woody%5C+plants%2C%5C+and%5C+reflected%5C+the%5C+genetic%5C+structure%5C+of%5C+its%5C+ancestry%5C+to%5C+same%5C+extent.%5C+There%5C+was%5C+a%5C+high%5C+significant%5C+correlation%5C+between%5C+geographic%5C+distance%5C+and%5C+Nei%E2%80%99s%5C+genetic%5C+distance%5C+%5C%28r%5C+%3D%5C+0.372%2C%5C+P%5C+%3D%5C+0.001%5C%29%5C+of%5C+populations%2C%5C+which%5C+accorded%5C+with%5C+isolation%5C+by%5C+distance%5C+model.%5C+Inferring%5C+from%5C+Bayesian%5C+clustering%5C+of%5C+genotypes%2C%5C+all%5C+individuals%5C+of%5C+C.%5C+taliensis%5C+were%5C+divided%5C+into%5C+two%5C+groups%2C%5C+conflicting%5C+with%5C+the%5C+result%5C+based%5C+on%5C+Nei%E2%80%99s%5C+genetic%5C+distance%5C+and%5C+real%5C+geographic%5C+distribution%2C%5C+which%5C+suggested%5C+there%5C+were%5C+heavy%5C+and%5C+non%5C-random%5C+influences%5C+by%5C+human%5C+practices.%5C+According%5C+to%5C+allelic%5C+richness%2C%5C+there%5C+were%5C+no%5C+significant%5C+differences%5C+%5C%28P%5C+%3E%5C+0.05%5C%29%5C+between%5C+wild%5C+%5C%28AR%5C+%3D%5C+4.651%5C%29%2C%5C+semi%5C-cultivated%5C+%5C%28AR%5C+%3D%5C+5.091%5C%29%5C+and%5C+cultivated%5C+%5C%28AR%5C+%3D%5C+5.132%5C%29%5C+populations%5C+of%5C+C.%5C+taliensis%2C%5C+which%5C+suggested%5C+that%5C+the%5C+genetic%5C+background%5C+of%5C+long%5C-lived%5C+woody%5C+plant%5C+was%5C+not%5C+easy%5C+to%5C+be%5C+changed%2C%5C+and%5C+there%5C+were%5C+moderate%5C+high%5C+gene%5C+flow%5C+between%5C+populations.%5C+However%2C%5C+there%5C+was%5C+a%5C+significant%5C+difference%5C+%5C%28P%5C+%3C%5C+0.05%5C%29%5C+between%5C+wild%5C+%5C%28AR%5C+%3D%5C+5.9%5C%29%5C+and%5C+cultivated%5C+%5C%28AR%5C+%3D%5C+7.1%5C%29%5C+populations%5C+distributed%5C+in%5C+the%5C+same%5C+place%5C+in%5C+Yun%5C+county%2C%5C+Yunnan%5C+province%2C%5C+which%5C+may%5C+result%5C+from%5C+the%5C+hybridization%5C+and%5C+introgression%5C+of%5C+species%5C+in%5C+the%5C+tea%5C+garden%5C+and%5C+anthropogenic%5C+damages%5C+to%5C+the%5C+wild%5C+population.%5C+The%5C+hypothesis%5C+of%5C+hybrid%5C+origin%5C+of%5C+C.%5C+grandibracteata%5C+was%5C+tested%5C+by%5C+morphological%5C+and%5C+microsatellites%5C+analyses.%5C+Compared%5C+with%5C+other%5C+species%2C%5C+the%5C+locules%5C+in%5C+ovary%5C+of%5C+C.%5C+grandibracteata%5C+are%5C+variable%2C%5C+which%5C+showed%5C+a%5C+morphological%5C+intermediate%5C+and%5C+mosaic.%5C+Except%5C+one%5C+private%5C+allele%2C%5C+Ninety%5C-nine%5C+percent%5C+alleles%5C+of%5C+C.%5C+grandibracteata%5C+were%5C+shared%5C+with%5C+these%5C+of%5C+C.%5C+taliensis%5C+and%5C+C.%5C+sinensis%5C+var.%5C+assamica.%5C+And%5C+C.%5C+grandibracteata%5C+was%5C+nested%5C+in%5C+the%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Council Scholarship","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=Chloroplast%2BGenome&order=desc&&fq=dc.project.title_filter%3AChina%5C+Council%5C+Scholarship"},{"jsname":"lastIndexed","jscount":"2022-08-06"}],"Funding Project","dc.project.title_filter")'>
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When tropical and subtropical congeners met: Multiple ancient hybridization events within Eriobotrya in the Yunnan-Guizhou Plateau, a tropical-subtropical transition area in China
期刊论文
MOLECULAR ECOLOGY, 2022, 卷号: 31, 期号: 5, 页码: 1543-1561
Authors:
Chen,Sufang
;
Milne,Richard
;
Zhou,Renchao
;
Meng,Kaikai
;
Yin,Qianyi
;
Guo,Wei
;
Ma,Yongpeng
;
Mao,Kangshan
;
Xu,Kewang
;
Kim,Young-Dong
;
Truong Van Do
;
Liao,Wenbo
;
Fan,Qiang
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Submit date：2022/04/02
chloroplast capture
Eriobotrya
genome resequencing
global cooling
multiple ancient hybridization
tropical and subtropical zones
CHLOROPLAST CAPTURE
HYBRID SPECIATION
CLIMATE
DIVERSIFICATION
COLONIZATION
PERFORMANCE
DISCOVERY
SOFTWARE
SUGGEST
HISTORY
A global phylogeny of Lycopodiaceae (Lycopodiales; lycophytes) with the description of a new genus, Brownseya, from Oceania
期刊论文
TAXON, 2022, 卷号: 71, 期号: 1, 页码: 25-51
Authors:
Chen,De-Kui
;
Zhou,Xin-Mao
;
Rothfels,Carl J.
;
Shepherd,Lara D.
;
Knapp,Ralf
;
Zhang,Liang
;
Lu,Ngan Thi
;
Fan,Xue-Ping
;
Wan,Xia
;
Gao,Xin-Fen
;
He,Hai
;
Zhang,Li-Bing
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Huperzia
lycophyte phylogeny
Lycopodiella serpentina
Phlegmariurus
Phylloglossum
vascular plant evolution
COMPLETE CHLOROPLAST GENOME
LYCOPODIOPSIDA LYCOPODIACEAE
GENERIC CLASSIFICATION
SPORE MORPHOLOGY
EARLY EVOLUTION
LAND PLANTS
RBCL GENE
HUPERZIA
SEQUENCE
LIKELIHOOD
Testing genome skimming for species discrimination in the large and taxonomically difficult genus Rhododendron
期刊论文
MOLECULAR ECOLOGY RESOURCES, 2022, 卷号: 22, 期号: 1, 页码: 404-414
Authors:
Fu,Chao-Nan
;
Mo,Zhi-Qiong
;
Yang,Jun-Bo
;
Cai,Jie
;
Ye,Lin-Jiang
;
Zou,Jia-Yun
;
Qin,Han-Tao
;
Zheng,Wei
;
Hollingsworth,Peter M.
;
Li,De-Zhu
;
Gao,Lian-Ming
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Himalaya-Hengduan Mountains
infrageneric phylogenetic resolution
next generation DNA barcoding
Rhododendron
species discrimination
PHYLOGENETIC-RELATIONSHIPS
SECTIONAL RELATIONSHIPS
CHLOROPLAST GENOME
DNA BARCODES
ERICACEAE
HYBRIDIZATION
YUNNAN
DIVERSITY
PATTERNS
AGASTUM
The complete chloroplast genome of Hippuris vulgaris (Plantaginaceae)
期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 卷号: 6, 期号: 1, 页码: 259-260
Authors:
Liu,Dongmei
;
Li,Lijuan
;
Liu,Pengju
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Chloroplast genome
Hisppuris vulgaris
phylogeny
Can plastid genome sequencing be used for species identification in Lauraceae?
期刊论文
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2021, 卷号: 197, 期号: 1, 页码: 1-14
Authors:
Liu,Zhi-Fang
;
Ma,Hui
;
Ci,Xiu-Qin
;
Li,Lang
;
Song,Yu
;
Liu,Bing
;
Li,Hsi-Wen
;
Wang,Shu-Li
;
Qu,Xiao-Jian
;
Hu,Jian-Lin
;
Zhang,Xiao-Yan
;
Conran,John G.
;
Twyford,Alex D.
;
Yang,Jun-Bo
;
Hollingsworth,Peter M.
;
Li,Jie
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Submit date：2022/04/02
cytonuclear discordance
DNA barcoding
nrDNA
phylogenetics
plastomes
CHLOROPLAST GENOME
ALSEODAPHNOPSIS LAURACEAE
GENE ORGANIZATION
DNA BARCODES
NUCLEAR
EVOLUTION
ALIGNMENT
CLASSIFICATION
DISCORDANCE
CINNAMOMUM
An updated tribal classification of Lamiaceae based on plastome phylogenomics
期刊论文
BMC BIOLOGY, 2021, 卷号: 19, 期号: 1, 页码: 2
Authors:
Zhao,Fei
;
Chen,Ya-Ping
;
Salmaki,Yasaman
;
Drew,Bryan T.
;
Wilson,Trevor C.
;
Scheen,Anne-Cathrine
;
Celep,Ferhat
;
Braeuchler,Christian
;
Bendiksby,Mika
;
Wang,Qiang
;
Min,Dao-Zhang
;
Peng,Hua
;
Olmstead,Richard G.
;
Li,Bo
;
Xiang,Chun-Lei
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Lamiaceae
Lamioideae
Mints
Phylogenomics
Tribal relationships
COMPLETE CHLOROPLAST GENOME
HAWAIIAN ENDEMIC MINTS
MOLECULAR PHYLOGENY
POLLEN MORPHOLOGY
CLERODENDRUM LAMIACEAE
LAMIOIDEAE LAMIACEAE
STACHYDEAE LAMIACEAE
CHARACTER EVOLUTION
STAMINAL EVOLUTION
PERICARP STRUCTURE
Comparative Analyses of Chloroplast Genomes From 14 Zanthoxylum Species: Identification of Variable DNA Markers and Phylogenetic Relationships Within the Genus
期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 11, 页码: 605793
Authors:
Zhao,Kaihui
;
Li,Lianqiang
;
Quan,Hong
;
Yang,Junbo
;
Zhang,Zhirong
;
Liao,Zhihua
;
Lan,Xiaozhong
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Submit date：2022/04/02
Zanthoxylum
chloroplast genome
divergent hotspots
DNA barcode sequence
phylogeny
GENETIC DIVERSITY
SSR-MARKERS
SEQUENCE
ANNOTATION
PLATFORM
MATK
LOCI
WILD
PSBA
The complete chloroplast genome of Phlomoides younghushandii (Lamiaceae), a traditional Tibetan medicinal herb
期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 卷号: 6, 期号: 3, 页码: 1186-1188
Authors:
Min,Dao-Zhang
;
Zhao,Fei
;
Zhang,Qiong
;
Li,Bo
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Chinese herbal medicine
Lamiodide
Phlomideae
Phlomoides
plastome
CLASSIFICATION
PHYLOGENY
Complete chloroplast genome sequence of an endangered plant Oreocharis cotinifolia (Gesneriaceae) from Guangxi, China
期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 卷号: 6, 期号: 10, 页码: 2936-2938
Authors:
Tang,Jinli
;
Zhao,Bo
;
Li,Cailin
;
Hong,Xin
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View/Download：1/0
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Submit date：2022/04/02
Chloroplast genome Endangered
Oreocharis cotinifolia (Gesneriaceae)
Phylogeny
The complete chloroplast genome of Cephalotaxus lanceolata (Taxaceae), a plant species with extremely small populations
期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 卷号: 6, 期号: 3, 页码: 1116-1117
Authors:
Ge,Jia
;
Xiong,Yun
;
Luo,Guifen
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View/Download：14/0
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Submit date：2022/04/02
Cephalotaxus lanceolata
chloroplast genome
plastid genome
plant species with extremely small populations
