| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos | |
Guo, Zhen-Hua1 ; Ma, Peng-Fei1; Yang, Guo-Qian1; Hu, Jin-Yong2; Liu, Yun-Long1; Xia, En-Hua3; Zhong, Mi-Cai2,4; Zhao, Lei1,4; Sun, Gui-Ling5; Xu, Yu-Xing1,4; Zhao, You-Jie6; Zhang, Yi-Chi1; Zhang, Yu-Xiao7; Zhang, Xue-Mei1; Zhou, Meng-Yuan1; Guo, Ying1; Guo, Cen1,4; Liu, Jing-Xia1,4; Ye, Xia-Ying1; Chen, Yun-Mei1; Yang, Yang1; Hang, Bin8; Lin, Choun-Sea9; Lu, Ying10; Li, De-Zhu1
| |
| Corresponding Author | Lin, Choun-Sea(cslin99@gate.sinica.edu.tw) ; Lu, Ying(yinglu@shou.edu.cn) ; Li, De-Zhu(dzl@mail.kib.ac.cn) |
| 2019-10-07 | |
| Source Publication | MOLECULAR PLANT
 |
| ISSN | 1674-2052 |
| Volume | 12Issue:10Pages:1353-1365 |
| Abstract | Polyploidization is a major driver of speciation and its importance to plant evolution has been well recognized. Bamboos comprise one diploid herbaceous and three polyploid woody lineages, and are members of the only major subfamily in grasses that diversified in forests, with the woody members having a tree-like lignified culm. In this study, we generated four draft genome assemblies of major bamboo lineages with three different ploidy levels (diploid, tetraploid, and hexaploid). We also constructed a high-density genetic linkage map for a hexaploid species of bamboo, and used a linkage-map-based strategy for genome assembly and identification of subgenomes in polyploids. Further phylogenomic analyses using a large dataset of syntenic genes with expected copies based on ploidy levels revealed that woody bamboos originated subsequent to the divergence of the herbaceous bamboo lineage, and experienced complex reticulate evolution through three independent allopolyploid events involving four extinct diploid ancestors. A shared but distinct subgenome was identified in all polyploid forms, and the progenitor of this subgenome could have been critical in ancient polyploidizations and the origin of woody bamboos. Important genetic clues to the unique flowering behavior and woody trait in bamboos were also found. Taken together, our study provides significant insights into ancient reticulate evolution at the subgenome level in the absence of extant donor species, and offers a potential model scenario for broad-scale study of angiosperm origination by allopolyploidization. |
| Keyword | Bambusoideae polyploidization comparative genomics subgenome evolution flowering |
| DOI | 10.1016/j.molp.2019.05.009 |
| Indexed By | SCI ; SCI |
| Language | 英语 |
| WOS ID | WOS:000489132500006 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.kib.ac.cn/handle/151853/69881 |
| Collection | 中国西南野生生物种质资源库 |
| Corresponding Author | Lin, Choun-Sea; Lu, Ying; Li, De-Zhu |
| Affiliation | 1.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Yunnan, Peoples R China 3.Anhui Agr Univ, State Key Lab Tea Plant Biol & Utilizat, Hefei 230036, Anhui, Peoples R China 4.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650201, Yunnan, Peoples R China 5.Henan Univ, Dept Biol, State Key Lab Cotton Biol, Inst Plant Stress Biol, Kaifeng 475001, Henan, Peoples R China 6.Southwest Forestry Univ, Coll Big Data & Intelligent Engn, Kunming 650224, Yunnan, Peoples R China 7.Southwest Forestry Univ, Yunnan Acad Biodivers, Kunming 650224, Yunnan, Peoples R China 8.Chinese Acad Sci, Shanghai Inst Biol Sci, Natl Centerfor Gene Res, Shanghai Inst Plant Physiol & Ecol, Shanghai 200032, Peoples R China 9.Acad Sinica, Agr Biotechnol Res Ctr, Taipei, Taiwan 10.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai 201306, Peoples R China |
| Recommended Citation GB/T 7714 | Guo, Zhen-Hua,Ma, Peng-Fei,Yang, Guo-Qian,et al. Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos[J]. MOLECULAR PLANT,2019,12(10):1353-1365. |
| APA | Guo, Zhen-Hua.,Ma, Peng-Fei.,Yang, Guo-Qian.,Hu, Jin-Yong.,Liu, Yun-Long.,...&Li, De-Zhu.(2019).Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos.MOLECULAR PLANT,12(10),1353-1365. |
| MLA | Guo, Zhen-Hua,et al."Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos".MOLECULAR PLANT 12.10(2019):1353-1365. |
| Files in This Item: | Download All | |||||
| File Name/Size | DocType | Version | Access | License | ||
| Guo-2019-Genome Sequ（1655KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.
Edit Comment