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Phylogenomic insights into the reticulate evolution of Camellia sect. Paracamellia Sealy (Theaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
作者:  Qin,Sheng-Yuan;  Chen,Kai;  Zhang,Wen-Ju;  Xiang,Xiao-Guo;  Zuo,Zheng-Yu;  Guo,Cen;  Zhao,Yao;  Li,Lin-Feng;  Wang,Yu-Guo;  Song,Zhi-Ping;  Yang,Ji;  Yang,Xiao-Qiang;  Zhang,Jian;  Jin,Wei-Tao;  Wen,Qiang;  Zhao,Song-Zi;  Chen,Jia-Kuan;  Li,De-Zhu;  Rong,Jun
浏览  |  Adobe PDF(2146Kb)  |  收藏  |  浏览/下载：31/12  |  提交时间：2024/07/10
Camellia oleifera  hybridization  phylogenomics  plastome  polyploidization  transcriptome  EVERGREEN BROADLEAVED FORESTS  HISTORY  DYNAMICS  OLEIFERA  CHINA  PHYLOGEOGRAPHY  ALIGNMENT  TREE  
Multiple paternally inherited chloroplast capture events associated with Taxus speciation in the Hengduan Mountains 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2023, 卷号: 189, 页码: 107915
作者:  Qin,Han-Tao;  Moller,Michael;  Milne,Richard;  Luo,Ya-Huang;  Zhu,Guang-Fu;  Li,De-Zhu;  Liu,Jie;  Gao,Lian-Ming
浏览  |  Adobe PDF(4015Kb)  |  收藏  |  浏览/下载：29/11  |  提交时间：2024/07/25
Chloroplast capture  Genomic data  Hybridization  Hengduan Mountains  Phylogeny tree discordance  Taxus  POPULATION-SIZE CHANGES  TIBETAN PLATEAU MARGIN  CYTOPLASMIC INHERITANCE  HYBRID SPECIATION  GENETIC DIVERSITY  PINUS-DENSATA  R PACKAGE  TOOL SET  HYBRIDIZATION  BIODIVERSITY  
Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae 期刊论文
ANNALS OF BOTANY, 2022
作者:  Zhao, Lei;  Yang, Ying-Ying;  Qu, Xiao-Jian;  Ma, Hong;  Hu, Yi;  Li, Hong-Tao;  Yi, Ting-Shuang;  Li, De-Zhu
浏览  |  Adobe PDF(1678Kb)  |  收藏  |  浏览/下载：77/13  |  提交时间：2024/04/30
Araceae  diversification  phylogenomics  WGDs  adaptation  TRAIT-DEPENDENT SPECIATION  GENE DUPLICATION  ANGIOSPERM DIVERSIFICATION  PHYLOGENOMIC ANALYSES  NUCLEAR GENES  POLYPLOIDY  EVOLUTIONARY  FAMILY  RATES  TOOL  
Variations in genetic diversity in cultivated Pistacia chinensis 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 13, 页码: 1030647
作者:  Han, Biao;  Zhang, Ming-Jia;  Xian, Yang;  Xu, Hui;  Cui, Cheng-Cheng;  Liu, Dan;  Wang, Lei;  Li, De-Zhu;  Li, Wen-Qing;  Xie, Xiao-Man
浏览  |  Adobe PDF(4051Kb)  |  收藏  |  浏览/下载：15/4  |  提交时间：2024/08/21
discordance  genetic diversity  nuclear SNPs  Pistacia chinensis  plastome  MOLECULAR EVOLUTION  RATES  POPULATIONS  SELECTION  ALIGNMENT  HISTORY  
Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12, 页码: 824672
作者:  Wu, Hong;  Yang, Jun-Bo;  Liu, Jing-Xia;  Li, De-Zhu;  Ma, Peng-Fei
浏览  |  Adobe PDF(6314Kb)  |  收藏  |  浏览/下载：17/7  |  提交时间：2024/08/21
Poales  phylogenomic conflict  plastome  mitochondrial  nuclear  EVOLUTIONARY SIGNIFICANCE  PLASTID GENOMES  NUCLEAR GENES  SEQUENCE DATA  TREE  MITOCHONDRIAL  DIVERSIFICATION  FAMILIES  RBCL  CLASSIFICATION  
Phylogenomics and the flowering plant tree of life 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022
作者:  Guo, Cen;  Luo, Yang;  Gao, Lian-Ming;  Yi, Ting-Shuang;  Li, Hong-Tao;  Yang, Jun-Bo;  Li, De-Zhu
浏览  |  Adobe PDF(1181Kb)  |  收藏  |  浏览/下载：135/15  |  提交时间：2024/08/21
angiosperms  hybridization  incomplete lineage sorting  orthology inference  phylogenetic conflicts  reduced representation sequencing  whole-genome sequencing  whole-genome duplication  SYSTEMATIC-ERRORS  RNA-SEQ  SEQUENCE CAPTURE  SEED PLANTS  DATA SETS  GENOME  EVOLUTION  RADSEQ  TOOL  CLASSIFICATION  
Genomic insights into the origin, domestication and genetic basis of agronomic traits of castor bean 期刊论文
GENOME BIOLOGY, 2021, 卷号: 22, 期号: 1, 页码: 113
作者:  Xu,Wei;  Wu,Di;  Yang,Tianquan;  Sun,Chao;  Wang,Zaiqing;  Han,Bing;  Wu,Shibo;  Yu,Anmin;  Chapman,Mark A.;  Muraguri,Sammy;  Tan,Qing;  Wang,Wenbo;  Bao,Zhigui;  Liu,Aizhong;  Li,De-Zhu
收藏  |  浏览/下载：142/0  |  提交时间：2022/04/02
Genomic evolution  Domestication  Population genetics  GWAS  Castor bean  SINGLE NUCLEOTIDE POLYMORPHISMS  SEED SIZE  PHYLOGENETIC ANALYSIS  CELL ELONGATION  PLANT-GROWTH  ARABIDOPSIS  ANNOTATION  PROVIDES  YIELD  TOOL  
Phylogeny and biogeography of Fagus (Fagaceae) based on 28 nuclear single/low-copy loci 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021
作者:  Jiang,Lu;  Bao,Qin;  He,Wei;  Fan,Deng-Mei;  Cheng,Shan-Mei;  Lopez-Pujol,Jordi;  Chung,Myong Gi;  Sakaguchi,Shota;  Sanchez-Gonzalez,Arturo;  Gedik,Aysun;  Li,De-Zhu;  Kou,Yi-Xuan;  Zhang,Zhi-Yong
收藏  |  浏览/下载：119/0  |  提交时间：2022/04/02
biogeography  Fagus  nuclear single-copy gene  phylogeny  species tree  MULTINERVIS NAKAI FAGACEAE  NORTHERN-HEMISPHERE  GENETIC-VARIATION  TIBETAN PLATEAU  WESTERN EURASIA  LAND BRIDGES  SYLVATICA L.  SEQUENCE  BEECH  EVOLUTION  
Spatiotemporal maintenance of flora in the Himalaya biodiversity hotspot: Current knowledge and future perspectives 期刊论文
ECOLOGY AND EVOLUTION, 2021, 卷号: 11, 期号: 16, 页码: 10794-10812
作者:  Wambulwa,Moses C.;  Milne,Richard;  Wu,Zeng-Yuan;  Spicer,Robert A.;  Provan,Jim;  Luo,Ya-Huang;  Zhu,Guang-Fu;  Wang,Wan-Ting;  Wang,Hong;  Gao,Lian-Ming;  Li,De-Zhu;  Liu,Jie
浏览  |  Adobe PDF(2089Kb)  |  收藏  |  浏览/下载：238/74  |  提交时间：2022/04/02
biodiversity hotspot  climate change  elevational gradient  Himalayan flora  mountain ecosystem  spatiotemporal diversification  SPECIES RICHNESS PATTERNS  QINGHAI-TIBET PLATEAU  SOUTH ASIAN MONSOON  ELEVATIONAL GRADIENT  HENGDUAN MOUNTAINS  CLIMATE-CHANGE  BETA-DIVERSITY  QUATERNARY GLACIATION  GENETIC CONSEQUENCES  ARTIFICIAL DISPERSAL  
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms 期刊论文
NATURE PLANTS, 2021, 卷号: 7, 期号: 8, 页码: 1015+
作者:  Stull,Gregory W.;  Qu,Xiao-Jian;  Parins-Fukuchi,Caroline;  Yang,Ying-Ying;  Yang,Jun-Bo;  Yang,Zhi-Yun;  Hu,Yi;  Ma,Hong;  Soltis,Pamela S.;  Soltis,Douglas E.;  Li,De-Zhu;  Smith,Stephen A.;  Yi,Ting-Shuang
浏览  |  Adobe PDF(3414Kb)  |  收藏  |  浏览/下载：193/86  |  提交时间：2022/04/02
SEED PLANTS  R PACKAGE  POLYPLOIDY  CONIFERS  TREE  GENERATION  INFERENCE  ANCIENT  DISCORDANCE  ANGIOSPERMS