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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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GST,p < 0.001) and low levels of seed-based gene flow. C. debaoensis (Cycadaceae) is an endangered species restricted to the border of Guangxi and Yunnan province in southwest China. This species has been classified into two types: sand and karst, according to the soil matrix they grow on. We examined chloroplast sequence variation of the cpDNA sequences from 11 populations of this species. Significant population genetic differentiation was detected (GST= 0.684 and FST = 0.74160). There was marked genetic differentiation between populations in the sand and karst regions and no expansion was detected. Climate changes during glacial periods have had significant effects on the current distribution of cycads. The molecular phylogenetic data, together with the geographic distribution of the haplotypes, suggest that C. debaoensis experienced range contraction during glacial periods, and that the current populations are still confined to the original refugia in southwest China which have favorable habitats in glacial period. These results imply that small refugia were maintained in both sand and karst regions during the LGM (last glacial maximum). This species had no postglacial recolonization and only stayed in these refugia up to now. The low within-population diversity of C. debaoensis suggests that there were strong bottleneck events or founder effects within each separate region during the Quaternary climatic oscillations. Relatively high genetic and haplotype diversities were detected in the newly discovered populations, which located at intermediate locality of sand regions and had morphological variation; this is probably the consequence of the admixture of different haplotypes colonizing the area from separate sources. C. micholitzii occurs in the Annan Highlands in central Vietnam near the Laos border. C. bifida occurs in North Vietnam; its distribution extends across the border into adjacent localities in Guangxi and Yunnan in China. For the comparability between them,theywere considered as the same species C. micholitzii by many academicians. The cpDNA sequences from 11 populations showed that these very controversial species, C. micholitzii and C. bifida, is paraphyletic and should belong to the same species C. micholitzii. AMOVA analysis showed that the component of among-population within region/species (76.46%) was unexpectedly larger than the among-species/region component (14.97%), which also indicates that there is no justification for recognizing two species as C. micholitzii and C. bifida. This hypothesis was also supported by the geological data, especially the neotectonic history of the indo-china block, which started to move south since Oligocene and cause the geographic isolation of these two groups. Therefore, the most likely explanation to the phenotypic similarities between these two groups may be the retention of ancestral polymorphisms in the paraphyletic group due to incomplete lineage sorting. Furthermore, the similarities may also be ascribed to pollen-mediated gene flow among geographically proximate populations and/or phenotypic convergence under similar selection schemes in the same region. C.micholitzi had the higest genetic diversity (HT = 0.980,) and genetic differentiation (GST = 0.830, NST = 0.915) among the C. micholitzii complex. The high genetic diversity might be attributed to its long evolutionary history, highly diverse habitats. The ineffective mode of seed dispersal and dramatic neotectonic movement in the distribution range of this species could result in the high genetic differentiation. 2. Phylogeographic analysis based on nuclear ribosomal sequences, We sequenced the nrDNA ITS in all 27 populations sampled, 7 haplotypes were identified, among which C. micholitzii had 6, while C. multipinnata, C. longipetiolula and C. debaoensis shared the remaining one. Compared to chloroplast genes, nuclear genes had higher correlation between genetic and geographical distance, but lower interspecies differentiation (54.42% vs 25.24%). Phylogeographical structure of C. micholitzii and C.bifida based on ITS Variation was consistent with the morphology differentiation. This similar in nuclear gene should be ascribed to pollen-mediated gene flow among geographically proximate populations.Long-distance gene flow over the two groups was clearly interrupted, which brought on the nrDNA genetic differenciation between the geographically isolated groups, to a certain extent affected the morphological variation. 3. Interspecies relationships among Cycas micholitzii complex, We analysed chloroplast sequence variation of the atpB-rbcL and psbA-trnH intergenic spacers in 27 populations sampled of C. micholitzii complex, AMOVA analysis showed that the component of among-species/region component (59.21%). However, phylogenic analysis showed that the haplotypes of C. micholitzii complex couldn`t grouped into four clusters closely corresponding to the narrowly defined C. micholitzi, C. multipinnata, C. debaoensis and C. longipetiolula. We concluded that the conflict may result from several factors: firstly incomplete lineage sorting of C. micholitzii; secondly hybridization/introgression of sympatrically cycads, which would be supported by evidence base on nrDNA ITS sequences; thirdly intramolecular recombination in cpDNA of cycads; eventually the neotectonic movement in the distribution range of this 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Systematics and Biogeography of Aralia L. (Araliaceae):Revision of Aralia Sects. Aralia, Humiles, Nanae, andSciadodendron
期刊论文
出版物, 3111, 卷号: 57, 期号: 0, 页码: 1-172
作者:
Jun Wen
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浏览/下载：253/6
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提交时间：2017/07/24
Aralia
Aralia Sect. Aralia
Aralia Sect. Dimorphanthus
Aralia Sect. Humiles
Aralia Sect. Nanae
Aralia Sect. pentapanax
Aralia Sect. Sciadodendron
Biogeography
Araliaceae
Systematics
New insights into intergeneric relationships of Hickeliinae (Poaceae: Bambusoideae) revealed by complete plastid genomes
期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 125-132
作者:
Rakotonasolo,Rivontsoa A.
;
Dransfield,Soejatmi
;
Haevermans,Thomas
;
Ralimanana,Helene
;
Vorontsova,Maria S.
;
Zhou,Meng-Yuan
;
Li,De-Zhu
Adobe PDF(921Kb)
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浏览/下载：8/0
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提交时间：2024/05/09
Bamboo
Hickeliinae
Madagascar
Paleotropical
Phylogenomics
Plastome
WOODY BAMBOOS
PHYLOGENETIC ANALYSIS
MADAGASCAR
DIVERSIFICATION
CLASSIFICATION
TEMPERATE
SEQUENCES
TOOLS
The identity of Dinochloa species and enumeration of Melocalamus (Poaceae: Bambusoideae) in China
期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 133-146
作者:
Liu,Jing-Xia
;
Xu,Zu-Chang
;
Zhang,Yu-Xiao
;
Zhou,Meng-Yuan
;
Li,De-Zhu
Adobe PDF(8016Kb)
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浏览/下载：9/0
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提交时间：2024/05/09
ddRAD
Melocalamus orenudus
Melocalamus puberulus
Melocalamus utilis
New combinations
Lectotypification
GRAMINEAE
NUCLEAR
STACKS
GENE
Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos
期刊论文
PLANTA, 2022, 卷号: 256, 期号: 3, 页码: 53
作者:
Niu, Liang-Zhong
;
Xu, Wei
;
Ma, Peng-Fei
;
Guo, Zhen-Hua
;
Li, De-Zhu
Adobe PDF(3169Kb)
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浏览/下载：18/5
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提交时间：2024/04/30
DNA methylation
Gene expression
Internode elongation
Jasmonic acid
Woody bamboos
PHENYLALANINE AMMONIA-LYASE
MOLECULAR CHARACTERIZATION
CYTOSINE METHYLTRANSFERASE
INTERNODE ELONGATION
TRANSCRIPTION FACTOR
H3 LYSINE-9
ARABIDOPSIS
EXPRESSION
DEMETHYLATION
PROTEIN
New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos
期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 12, 页码: 5752-5768
作者:
Jin,Guihua
;
Ma,Peng-Fei
;
Wu,Xiaopei
;
Gu,Lianfeng
;
Long,Manyuan
;
Zhang,Chengjun
;
Li,De-Zhu
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浏览/下载：86/0
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提交时间：2022/04/02
fast stem growth
orphan genes
de novo genes
WGD
woody bamboos
evolutionary innovation
EVOLUTIONARY ORIGIN
DROSOPHILA-MELANOGASTER
PHYLOGENETIC ANALYSIS
VERTEBRATE EVOLUTION
RAPID EVOLUTION
HUMAN TISSUE
YOUNG GENES
TRANSCRIPTION
EXPRESSION
HOURGLASS
Gigantochloa glabrata (Poaceae, Bambusoideae a new bamboo species from Yunnan, China
期刊论文
PHYTOKEYS, 2021, 期号: 171, 页码: 37-45
作者:
Xu,Zu-Chang
;
Liu,Jing-Xia
;
Li,De-Zhu
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浏览/下载：37/0
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提交时间：2022/04/02
Gigantochloa
new species
paleotropical woody bamboos
POACEAE BAMBUSOIDEAE
Yunnan-Guizhou Plateau: a mycological hotspot
期刊论文
PHYTOTAXA, 2021, 卷号: 523, 期号: 1, 页码: 1-31
作者:
Wijayawardene,Nalin N.
;
Dissanayake,Lakmali S.
;
Dai,Dong-Qi
;
Li,Qi-Rui
;
Xiao,Yuanpin
;
Wen,Ting-Chi
;
Karunarathna,Samantha C.
;
Wu,Hai-Xia
;
Zhang,Huang
;
Tibpromma,Saowaluck
;
Kang,Ji-Chuan
;
Wang,Yong
;
Shen,Xiang-Chun
;
Tang,Li-Zhou
;
Deng,Chun-Ying
;
Liu,Yanxia
;
Kang,Yingqian
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浏览/下载：130/41
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提交时间：2022/04/02
2 new species
polyphasic approach
six new records
species diversity
taxonomy
MULTIPLE SEQUENCE ALIGNMENT
SP-NOV
PHYLOGENETIC CLASSIFICATION
ENTOMOPATHOGENIC GENUS
MULTIGENE PHYLOGENY
FUNGI
CORDYCEPS
GENERA
DIVERSITY
LINEAGES
Five Novel Freshwater Ascomycetes Indicate High Undiscovered Diversity in Lotic Habitats in Thailand
期刊论文
JOURNAL OF FUNGI, 2021, 卷号: 7, 期号: 2, 页码: 117
作者:
Calabon,Mark S.
;
Jones,E. B. Gareth
;
Boonmee,Saranyaphat
;
Doilom,Mingkwan
;
Lumyong,Saisamorn
;
Hyde,Kevin D.
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浏览/下载：70/14
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提交时间：2022/04/02
6 new taxa
aquatic fungi
Dothideomycetes
freshwater fungi
multi-loci phylogenetic analyses
Neoxylomyces
Sordariomycetes
tropical mycology
PHYLOGENETIC CONTRIBUTIONS
MOLECULAR PHYLOGENY
REFINED FAMILIES
SUBMERGED WOOD
BACKBONE TREE
WESTERN-GHATS
PRIMER SETS
FUNGI
NOV.
PHAEOACREMONIUM
Phylogenetic assessment and taxonomic revision of Halobyssothecium and Lentithecium (Lentitheciaceae, Pleosporales)
期刊论文
MYCOLOGICAL PROGRESS, 2021, 卷号: 20, 期号: 5, 页码: 701-720
作者:
Calabon,Mark Seasat
;
Jones,E. B. Gareth
;
Hyde,Kevin D.
;
Boonmee,Saranyaphat
;
Tibell,Sanja
;
Tibell,Leif
;
Pang,Ka-Lai
;
Phookamsak,Rungtiwa
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浏览/下载：72/15
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提交时间：2022/04/02
3 new taxa
Dothideomycetes
Freshwater fungi
Marine fungi
Multi-locus phylogeny
BAMBUSICOLA SP-NOV
FRESH-WATER
MARINE FUNGI
LIPUT RIVER
BAMBOO
TAXA
ASCOMYCETE
DIVERSITY
MASSARINA
GENERA
Insight into the Systematics of Novel Entomopathogenic Fungi Associated with Armored Scale Insect, Kuwanaspis howardi (Hemiptera: Diaspididae) in China
期刊论文
JOURNAL OF FUNGI, 2021, 卷号: 7, 期号: 8, 页码: 628
作者:
Xu,Xiu-Lan
;
Zeng,Qian
;
Lv,Yi-Cong
;
Jeewon,Rajesh
;
Maharachchikumbura,Sajeewa S. N.
;
Wanasinghe,Dhanushka N.
;
Hyde,Kevin D.
;
Xiao,Qian-Gang
;
Liu,Ying-Gao
;
Yang,Chun-Lin
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浏览/下载：64/10
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提交时间：2022/04/02
2 new taxa
bamboo
entomopathogens
Nectriaceae
Podonectriaceae
scale insect
NATURAL CLASSIFICATION
MULTIGENE PHYLOGENY
REFINED FAMILIES
GENUS
REVISION
OUTLINE
GENERA
IDENTIFICATION
COMBINATIONS
PODONECTRIA
