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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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中国科学院东亚植... [147]
昆明植物所硕博研... [100]
中国西南野生生物种... [82]
资源植物与生物技术... [79]
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李德铢 [89]
许建初 [64]
郭振华 [25]
Yang Jing [14]
张宪智 [12]
赵琪 [11]
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PHYTOTAXA [41]
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植物分类与资源学报 [24]
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云南植物研究 [14]
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GST,p < 0.001) and low levels of seed-based gene flow. C. debaoensis (Cycadaceae) is an endangered species restricted to the border of Guangxi and Yunnan province in southwest China. This species has been classified into two types: sand and karst, according to the soil matrix they grow on. We examined chloroplast sequence variation of the cpDNA sequences from 11 populations of this species. Significant population genetic differentiation was detected (GST= 0.684 and FST = 0.74160). There was marked genetic differentiation between populations in the sand and karst regions and no expansion was detected. Climate changes during glacial periods have had significant effects on the current distribution of cycads. The molecular phylogenetic data, together with the geographic distribution of the haplotypes, suggest that C. debaoensis experienced range contraction during glacial periods, and that the current populations are still confined to the original refugia in southwest China which have favorable habitats in glacial period. These results imply that small refugia were maintained in both sand and karst regions during the LGM (last glacial maximum). This species had no postglacial recolonization and only stayed in these refugia up to now. The low within-population diversity of C. debaoensis suggests that there were strong bottleneck events or founder effects within each separate region during the Quaternary climatic oscillations. Relatively high genetic and haplotype diversities were detected in the newly discovered populations, which located at intermediate locality of sand regions and had morphological variation; this is probably the consequence of the admixture of different haplotypes colonizing the area from separate sources. C. micholitzii occurs in the Annan Highlands in central Vietnam near the Laos border. C. bifida occurs in North Vietnam; its distribution extends across the border into adjacent localities in Guangxi and Yunnan in China. For the comparability between them,theywere considered as the same species C. micholitzii by many academicians. The cpDNA sequences from 11 populations showed that these very controversial species, C. micholitzii and C. bifida, is paraphyletic and should belong to the same species C. micholitzii. AMOVA analysis showed that the component of among-population within region/species (76.46%) was unexpectedly larger than the among-species/region component (14.97%), which also indicates that there is no justification for recognizing two species as C. micholitzii and C. bifida. This hypothesis was also supported by the geological data, especially the neotectonic history of the indo-china block, which started to move south since Oligocene and cause the geographic isolation of these two groups. Therefore, the most likely explanation to the phenotypic similarities between these two groups may be the retention of ancestral polymorphisms in the paraphyletic group due to incomplete lineage sorting. Furthermore, the similarities may also be ascribed to pollen-mediated gene flow among geographically proximate populations and/or phenotypic convergence under similar selection schemes in the same region. C.micholitzi had the higest genetic diversity (HT = 0.980,) and genetic differentiation (GST = 0.830, NST = 0.915) among the C. micholitzii complex. The high genetic diversity might be attributed to its long evolutionary history, highly diverse habitats. The ineffective mode of seed dispersal and dramatic neotectonic movement in the distribution range of this species could result in the high genetic differentiation. 2. Phylogeographic analysis based on nuclear ribosomal sequences, We sequenced the nrDNA ITS in all 27 populations sampled, 7 haplotypes were identified, among which C. micholitzii had 6, while C. multipinnata, C. longipetiolula and C. debaoensis shared the remaining one. Compared to chloroplast genes, nuclear genes had higher correlation between genetic and geographical distance, but lower interspecies differentiation (54.42% vs 25.24%). Phylogeographical structure of C. micholitzii and C.bifida based on ITS Variation was consistent with the morphology differentiation. This similar in nuclear gene should be ascribed to pollen-mediated gene flow among geographically proximate populations.Long-distance gene flow over the two groups was clearly interrupted, which brought on the nrDNA genetic differenciation between the geographically isolated groups, to a certain extent affected the morphological variation. 3. Interspecies relationships among Cycas micholitzii complex, We analysed chloroplast sequence variation of the atpB-rbcL and psbA-trnH intergenic spacers in 27 populations sampled of C. micholitzii complex, AMOVA analysis showed that the component of among-species/region component (59.21%). However, phylogenic analysis showed that the haplotypes of C. micholitzii complex couldn`t grouped into four clusters closely corresponding to the narrowly defined C. micholitzi, C. multipinnata, C. debaoensis and C. longipetiolula. We concluded that the conflict may result from several factors: firstly incomplete lineage sorting of C. micholitzii; secondly hybridization/introgression of sympatrically cycads, which would be supported by evidence base on nrDNA ITS sequences; thirdly intramolecular recombination in cpDNA of cycads; eventually the neotectonic movement in the distribution range of this 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Science Foundation, GAR[P506/14/13541S]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3ACzech%5C+Science%5C+Foundation%2C%5C+GAR%5C%5BP506%5C%2F14%5C%2F13541S%5C%5D"},{"jsname":"Excellent Doctor Fund of Zhongkai University of Agriculture and Engineering[KA180581235]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3AExcellent%5C+Doctor%5C+Fund%5C+of%5C+Zhongkai%5C+University%5C+of%5C+Agriculture%5C+and%5C+Engineering%5C%5BKA180581235%5C%5D"},{"jsname":"Mae Fah Luang University","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3AMae%5C+Fah%5C+Luang%5C+University"},{"jsname":"Mae Fah Luang University[592010200112]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3AMae%5C+Fah%5C+Luang%5C+University%5C%5B592010200112%5C%5D"},{"jsname":"lastIndexed","jscount":"2024-09-09"}],"Funding Project","dc.project.title_filter")'>
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Systematics and Biogeography of Aralia L. (Araliaceae):Revision of Aralia Sects. Aralia, Humiles, Nanae, andSciadodendron
期刊论文
出版物, 3111, 卷号: 57, 期号: 0, 页码: 1-172
Authors:
Jun Wen
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Submit date：2017/07/24
Aralia
Aralia Sect. Aralia
Aralia Sect. Dimorphanthus
Aralia Sect. Humiles
Aralia Sect. Nanae
Aralia Sect. pentapanax
Aralia Sect. Sciadodendron
Biogeography
Araliaceae
Systematics
Ascopolyporus tibetensis (Cordycipitaceae, Hypocreales): a new species from Tibet, China
期刊论文
PHYTOTAXA, 2023, 卷号: 592, 期号: 2, 页码: 88-98
Authors:
Yu,Feng-Ming
;
Wei,De-Ping
;
Zhao,Qi
;
Tang,Song-Min
;
Luangharn,Thatsanee
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Submit date：2024/07/16
ascopolyporus-like fungi
epiphyte
entomopathogenic fungi
phylogenetic analysis
PHYLOGENY
ASCOMYCOTA
MORPHOLOGY
CORDYCEPS
TREES
FUNGI
GENUS
New insights into intergeneric relationships of Hickeliinae (Poaceae: Bambusoideae) revealed by complete plastid genomes
期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 125-132
Authors:
Rakotonasolo,Rivontsoa A.
;
Dransfield,Soejatmi
;
Haevermans,Thomas
;
Ralimanana,Helene
;
Vorontsova,Maria S.
;
Zhou,Meng-Yuan
;
Li,De-Zhu
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Submit date：2024/05/09
Bamboo
Hickeliinae
Madagascar
Paleotropical
Phylogenomics
Plastome
WOODY BAMBOOS
PHYLOGENETIC ANALYSIS
MADAGASCAR
DIVERSIFICATION
CLASSIFICATION
TEMPERATE
SEQUENCES
TOOLS
Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia
期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 147-155
Authors:
Lv,Shi-Yu
;
Ye,Xia-Ying
;
Li,Zhong-Hu
;
Ma,Peng-Fei
;
Li,De-Zhu
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Submit date：2024/05/09
Fargesia
Genome-skimming
DNA barcoding
Plastome
Ribosomal DNA
WHOLE CHLOROPLAST GENOMES
RNA-SEQ DATA
ARUNDINARIEAE POACEAE
BAMBUSOIDEAE
TEMPERATE
PLATFORM
The identity of Dinochloa species and enumeration of Melocalamus (Poaceae: Bambusoideae) in China
期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 133-146
Authors:
Liu,Jing-Xia
;
Xu,Zu-Chang
;
Zhang,Yu-Xiao
;
Zhou,Meng-Yuan
;
Li,De-Zhu
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Submit date：2024/05/09
ddRAD
Melocalamus orenudus
Melocalamus puberulus
Melocalamus utilis
New combinations
Lectotypification
GRAMINEAE
NUCLEAR
STACKS
GENE
中国云南的微型真菌：蕨类植物上子囊菌的案例研究
学位论文
: 中国科学院大学, 2022
Authors:
Rungtiwa Phookamsak
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Submit date：2024/05/14
子囊菌，中国真菌，内生菌，真菌多样性，形态-分子学方法，腐生真菌，分类学
Ascomycota, Chinese mycota, Endophytes, Fungal diversity, morpho-molecular approaches, Saprobic fungi, Taxonomy
Insight into the Taxonomic Resolution of Apiospora: Introducing Novel Species and Records from Bamboo in China and Thailand
期刊论文
DIVERSITY-BASEL, 2022, 卷号: 14, 期号: 11, 页码: 918
Authors:
Monkai, Jutamart
;
Phookamsak, Rungtiwa
;
Tennakoon, Danushka S.
;
Bhat, Darbhe Jayarama
;
Xu, Sheng
;
Li, Qinxian
;
Xu, Jianchu
;
Mortimer, Peter E.
;
Kumla, Jaturong
;
Lumyong, Saisamorn
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Submit date：2024/03/11
Pseudophaeocytostroma bambusicola gen. et sp. nov. (Diaporthaceae) from bamboo in Yunnan, PR China
期刊论文
PHYTOTAXA, 2022, 卷号: 571, 期号: 1, 页码: 39-51
Authors:
Monkai, Jutamart
;
Phookamsak, Rungtiwa
;
Xu, Sheng
;
Xu, Jianchu
;
Mortimer, Peter E.
;
Karunarathna, Samantha C.
;
Suwannarach, Nakarin
;
Lumyong, Saisamorn
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Submit date：2024/03/11
Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos
期刊论文
PLANTA, 2022, 卷号: 256, 期号: 3, 页码: 53
Authors:
Niu, Liang-Zhong
;
Xu, Wei
;
Ma, Peng-Fei
;
Guo, Zhen-Hua
;
Li, De-Zhu
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Submit date：2024/04/30
DNA methylation
Gene expression
Internode elongation
Jasmonic acid
Woody bamboos
PHENYLALANINE AMMONIA-LYASE
MOLECULAR CHARACTERIZATION
CYTOSINE METHYLTRANSFERASE
INTERNODE ELONGATION
TRANSCRIPTION FACTOR
H3 LYSINE-9
ARABIDOPSIS
EXPRESSION
DEMETHYLATION
PROTEIN
The complete chloroplast genome and phylogenetic position of Thamnocalamus unispiculatus (Poaceae: Bambusoideae: Arundinarieae)
期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 卷号: 7, 期号: 6, 页码: 1168-1170
Authors:
Wang, Weihua
;
Lv, Shiyu
;
Liu, Li
;
Meng, Yuanyan
;
Zhang, Xiaolong
;
Ye, Xiaying
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Submit date：2024/04/30
Arundinarieae
Bambusoideae
chloroplast genome
phylogeny
Thamnocalamus unispiculatus
EVOLUTION
