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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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中国科学院东亚植... [147]
昆明植物所硕博研究... [89]
中国西南野生生物种... [82]
资源植物与生物技术... [79]
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李德铢 [85]
许建初 [58]
郭振华 [24]
Yang Jing [14]
张宪智 [12]
伊廷双 [11]
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PHYTOTAXA [34]
植物分类与资源学报 [24]
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云南植物研究 [14]
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GST,p < 0.001) and low levels of seed-based gene flow. C. debaoensis (Cycadaceae) is an endangered species restricted to the border of Guangxi and Yunnan province in southwest China. This species has been classified into two types: sand and karst, according to the soil matrix they grow on. We examined chloroplast sequence variation of the cpDNA sequences from 11 populations of this species. Significant population genetic differentiation was detected (GST= 0.684 and FST = 0.74160). There was marked genetic differentiation between populations in the sand and karst regions and no expansion was detected. Climate changes during glacial periods have had significant effects on the current distribution of cycads. The molecular phylogenetic data, together with the geographic distribution of the haplotypes, suggest that C. debaoensis experienced range contraction during glacial periods, and that the current populations are still confined to the original refugia in southwest China which have favorable habitats in glacial period. These results imply that small refugia were maintained in both sand and karst regions during the LGM (last glacial maximum). This species had no postglacial recolonization and only stayed in these refugia up to now. The low within-population diversity of C. debaoensis suggests that there were strong bottleneck events or founder effects within each separate region during the Quaternary climatic oscillations. Relatively high genetic and haplotype diversities were detected in the newly discovered populations, which located at intermediate locality of sand regions and had morphological variation; this is probably the consequence of the admixture of different haplotypes colonizing the area from separate sources. C. micholitzii occurs in the Annan Highlands in central Vietnam near the Laos border. C. bifida occurs in North Vietnam; its distribution extends across the border into adjacent localities in Guangxi and Yunnan in China. For the comparability between them,theywere considered as the same species C. micholitzii by many academicians. The cpDNA sequences from 11 populations showed that these very controversial species, C. micholitzii and C. bifida, is paraphyletic and should belong to the same species C. micholitzii. AMOVA analysis showed that the component of among-population within region/species (76.46%) was unexpectedly larger than the among-species/region component (14.97%), which also indicates that there is no justification for recognizing two species as C. micholitzii and C. bifida. This hypothesis was also supported by the geological data, especially the neotectonic history of the indo-china block, which started to move south since Oligocene and cause the geographic isolation of these two groups. Therefore, the most likely explanation to the phenotypic similarities between these two groups may be the retention of ancestral polymorphisms in the paraphyletic group due to incomplete lineage sorting. Furthermore, the similarities may also be ascribed to pollen-mediated gene flow among geographically proximate populations and/or phenotypic convergence under similar selection schemes in the same region. C.micholitzi had the higest genetic diversity (HT = 0.980,) and genetic differentiation (GST = 0.830, NST = 0.915) among the C. micholitzii complex. The high genetic diversity might be attributed to its long evolutionary history, highly diverse habitats. The ineffective mode of seed dispersal and dramatic neotectonic movement in the distribution range of this species could result in the high genetic differentiation. 2. Phylogeographic analysis based on nuclear ribosomal sequences, We sequenced the nrDNA ITS in all 27 populations sampled, 7 haplotypes were identified, among which C. micholitzii had 6, while C. multipinnata, C. longipetiolula and C. debaoensis shared the remaining one. Compared to chloroplast genes, nuclear genes had higher correlation between genetic and geographical distance, but lower interspecies differentiation (54.42% vs 25.24%). Phylogeographical structure of C. micholitzii and C.bifida based on ITS Variation was consistent with the morphology differentiation. This similar in nuclear gene should be ascribed to pollen-mediated gene flow among geographically proximate populations.Long-distance gene flow over the two groups was clearly interrupted, which brought on the nrDNA genetic differenciation between the geographically isolated groups, to a certain extent affected the morphological variation. 3. Interspecies relationships among Cycas micholitzii complex, We analysed chloroplast sequence variation of the atpB-rbcL and psbA-trnH intergenic spacers in 27 populations sampled of C. micholitzii complex, AMOVA analysis showed that the component of among-species/region component (59.21%). However, phylogenic analysis showed that the haplotypes of C. micholitzii complex couldn`t grouped into four clusters closely corresponding to the narrowly defined C. micholitzi, C. multipinnata, C. debaoensis and C. longipetiolula. We concluded that the conflict may result from several factors: firstly incomplete lineage sorting of C. micholitzii; secondly hybridization/introgression of sympatrically cycads, which would be supported by evidence base on nrDNA ITS sequences; thirdly intramolecular recombination in cpDNA of cycads; eventually the neotectonic movement in the distribution range of this 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Science Foundation, GAR[P506/14/13541S]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3ACzech%5C+Science%5C+Foundation%2C%5C+GAR%5C%5BP506%5C%2F14%5C%2F13541S%5C%5D"},{"jsname":"Excellent Doctor Fund of Zhongkai University of Agriculture and Engineering[KA180581235]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3AExcellent%5C+Doctor%5C+Fund%5C+of%5C+Zhongkai%5C+University%5C+of%5C+Agriculture%5C+and%5C+Engineering%5C%5BKA180581235%5C%5D"},{"jsname":"Mae Fah Luang University","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3AMae%5C+Fah%5C+Luang%5C+University"},{"jsname":"Mae Fah Luang University[592010200112]","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&sort_by=2&isNonaffiliated=false&search_type=-1&query1=BAMBOO&order=desc&&fq=dc.project.title_filter%3AMae%5C+Fah%5C+Luang%5C+University%5C%5B592010200112%5C%5D"},{"jsname":"lastIndexed","jscount":"2023-05-30"}],"Funding Project","dc.project.title_filter")'>
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Systematics and Biogeography of Aralia L. (Araliaceae):Revision of Aralia Sects. Aralia, Humiles, Nanae, andSciadodendron
期刊论文
出版物, 3111, 卷号: 57, 期号: 0, 页码: 1-172
Authors:
Jun Wen
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Submit date：2017/07/24
Aralia
Aralia Sect. Aralia
Aralia Sect. Dimorphanthus
Aralia Sect. Humiles
Aralia Sect. Nanae
Aralia Sect. pentapanax
Aralia Sect. Sciadodendron
Biogeography
Araliaceae
Systematics
New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos
期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 12, 页码: 5752-5768
Authors:
Jin,Guihua
;
Ma,Peng-Fei
;
Wu,Xiaopei
;
Gu,Lianfeng
;
Long,Manyuan
;
Zhang,Chengjun
;
Li,De-Zhu
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View/Download：21/0
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Submit date：2022/04/02
fast stem growth
orphan genes
de novo genes
WGD
woody bamboos
evolutionary innovation
EVOLUTIONARY ORIGIN
DROSOPHILA-MELANOGASTER
PHYLOGENETIC ANALYSIS
VERTEBRATE EVOLUTION
RAPID EVOLUTION
HUMAN TISSUE
YOUNG GENES
TRANSCRIPTION
EXPRESSION
HOURGLASS
Draft genome of the herbaceous bamboo Raddia distichophylla
期刊论文
G3-GENES GENOMES GENETICS, 2021, 卷号: 11, 期号: 2, 页码: jkaa049
Authors:
Li,Wei
;
Shi,Cong
;
Li,Kui
;
Zhang,Qun-Jie
;
Tong,Yan
;
Zhang,Yun
;
Wang,Jun
;
Clark,Lynn
;
Gao,Li-Zhi
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View/Download：22/0
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Submit date：2022/04/02
bamboos
Raddia distichophylla
whole-genome sequencing
DE-NOVO IDENTIFICATION
SSR-MARKERS
SEQUENCE
RNA
ALIGNMENT
POACEAE
ANNOTATION
PROGRAM
PROTEIN
PLANTS
Introducing a new pleosporalean family Sublophiostomataceae fam. nov. to accommodate Sublophiostoma gen. nov.
期刊论文
SCIENTIFIC REPORTS, 2021, 卷号: 11, 期号: 1, 页码: 9496
Authors:
Hongsanan,Sinang
;
Phookamsak,Rungtiwa
;
Goonasekara,Ishani D.
;
Thambugala,Kasun M.
;
Hyde,Kevin D.
;
Bhat,Jayarama D.
;
Suwannarach,Nakarin
;
Cheewangkoon,Ratchadawan
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Submit date：2022/04/02
NATURAL CLASSIFICATION
FUNGI
PHYLOGENY
MORPHOLOGY
SPECIATION
REVISION
OUTLINE
GENERA
TAXA
Mendogia diffusa sp. nov. and an updated key to the species of Mendogia (Myriangiaceae, Dothideomycetes)
期刊论文
BIODIVERSITY DATA JOURNAL, 2021, 卷号: 9, 页码: e67705
Authors:
Thiyagaraja,Vinodhini
;
Luecking,Robert
;
Ertz,Damien
;
Samarakoon,Milan C.
;
Wanasinghe,Dhanushka N.
;
Karunarathna,Samantha C.
;
Cheewangkoon,Ratchadawan
;
Hyde,Kevin D.
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Submit date：2022/04/02
one new species
morphology
multilocus phylogeny
saprotroph
taxonomy
FAM. NOV.
FUNGI
OUTLINE
Reappraisal of Immotthia in Dictyosporiaceae, Pleosporales: Introducing Immotthia bambusae sp. nov. and Pseudocyclothyriella clematidis comb. et gen. nov. Based on Morphology and Phylogeny
期刊论文
FRONTIERS IN MICROBIOLOGY, 2021, 卷号: 12, 页码: 656235
Authors:
Jiang,Hong-Bo
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Jeewon,Rajesh
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Karunarathna,Samantha C.
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Phukhamsakda,Chayanard
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Doilom,Mingkwan
;
Kakumyan,Pattana
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Suwannarach,Nakarin
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Phookamsak,Rungtiwa
;
Lumyong,Saisamorn
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Submit date：2022/04/02
bambusicolous fungi
Dothideomycetes
Pseudocoleophoma
taxonomy
two new taxa
VAMSAPRIYA XYLARIACEAE
BAMBOO
FUNGI
TAXA
BAMBUSICOLA
DIVERSITY
YUNNAN
ROUSSOELLACEAE
COMBINATIONS
FAMILY
Morphological and phylogenetic appraisal of Ophioceras (Ophioceraceae, Magnaporthales)
期刊论文
PLOS ONE, 2021, 卷号: 16, 期号: 8, 页码: e0253853
Authors:
Jiang,Hong-Bo
;
Hyde,Kevin D.
;
Yang,Er-Fu
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Kakumyan,Pattana
;
Bahkali,Ali H.
;
Elgorban,Abdallah M.
;
Karunarathna,Samantha C.
;
Phookamsak,Rungtiwa
;
Lumyong,Saisamorn
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Submit date：2022/04/02
FRESH-WATER FUNGI
SUBMERGED WOOD
HONG-KONG
GENERA
RIVER
COMMUNITIES
BAMBOO
One New Species and Two New Host Records of Apiospora from Bamboo and Maize in Northern Thailand with Thirteen New Combinations
期刊论文
LIFE-BASEL, 2021, 卷号: 11, 期号: 10, 页码: 1071
Authors:
Tian,Xingguo
;
Karunarathna,Samantha C.
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Mapook,Ausana
;
Promputtha,Itthayakorn
;
Xu,Jianchu
;
Bao,Danfeng
;
Tibpromma,Saowaluck
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Submit date：2022/04/02
one new species
new combinations
new host records
phylogeny
taxonomy
ARTHRINIUM APIOSPORACEAE
PRIMER SETS
FUNGI
YUNNAN
Phylogenetic assessment and taxonomic revision of Halobyssothecium and Lentithecium (Lentitheciaceae, Pleosporales)
期刊论文
MYCOLOGICAL PROGRESS, 2021, 卷号: 20, 期号: 5, 页码: 701-720
Authors:
Calabon,Mark Seasat
;
Jones,E. B. Gareth
;
Hyde,Kevin D.
;
Boonmee,Saranyaphat
;
Tibell,Sanja
;
Tibell,Leif
;
Pang,Ka-Lai
;
Phookamsak,Rungtiwa
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Submit date：2022/04/02
3 new taxa
Dothideomycetes
Freshwater fungi
Marine fungi
Multi-locus phylogeny
BAMBUSICOLA SP-NOV
FRESH-WATER
MARINE FUNGI
LIPUT RIVER
BAMBOO
TAXA
ASCOMYCETE
DIVERSITY
MASSARINA
GENERA
Morphological and phylogenetic characterization of fungi within Bambusicolaceae: introducing two new species from the Greater Mekong Subregion
期刊论文
MYCOLOGICAL PROGRESS, 2021, 卷号: 20, 期号: 5, 页码: 721-732
Authors:
Monkai,Jutamart
;
Wanasinghe,Dhanushka N.
;
Jeewon,Rajesh
;
Promputtha,Itthayakorn
;
Phookamsak,Rungtiwa
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Submit date：2022/04/02
Bambusicola
Dothideomycetes
Fungal taxonomy
Palmiascoma
Pleosporales
NORTHERN THAILAND
BAMBOO
YUNNAN
NOV
PLEOSPORALES
DIDYMOSPHAERIACEAE
DIATRYPACEAE
MASSARINEAE
XYLARIALES
DIVERSITY
