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Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2019, 卷号: 11, 期号: 10, 页码: 2789-2796
作者:  Qu, Xiao-Jian;  Fan, Shou-Jin;  Wicke, Susann;  Yi, Ting-Shuang
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plastome  parasitism  mycoheterotrophy  gene loss  Parasitaxus  
Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae) 期刊论文
PLANT DIVERSITY, 2019, 卷号: 41, 期号: 4, 页码: 213-219
作者:  Guo, Cen;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(690Kb)  |  收藏  |  浏览/下载:160/23  |  提交时间:2019/10/28
Shibataea  ddRAD-seq  Genome skimming  Phylogeny  Incongruence  
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes 期刊论文
PLANT METHODS, 2019, 卷号: 15, 页码: 12
作者:  Qu, Xiao-Jian;  Moore, Michael J.;  Li, De-Zhu;  Yi, Ting-Shuang
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PGA  Plastome  Batch annotation  Accuracy  BLAST  Software  Algorithms  
Alternative splicing coupled to nonsense-mediated mRNA decay contributes to the high-altitude adaptation of maca (Lepidium meyenii) 期刊论文
GENE, 2019, 卷号: 694, 页码: 7-18
作者:  Shi, Yong;  Su, Zechun;  Yang, Hong;  Wang, Wenzhi;  Jin, Guihua;  He, Guiqing;  Siddique, Abu Nasar;  Zhang, Liangsheng;  Zhu, Andan;  Xue, Runguang;  Zhang, Chengjun
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Alpine plants  Post-transcriptome  Intron retention  Alternative 3 ' splice site  Long non-coding RNA  Positive selection  
Complete loss of RNA editing from the plastid genome and most highly expressed mitochondrial genes of Welwitschia mirabilis 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2019, 卷号: 62, 期号: 4, 页码: 498-506
作者:  Fan, Weishu;  Guo, Wenhu;  Funk, Lexis;  Mower, Jeffrey P.;  Zhu, Andan
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RNA editing  massive loss  expression levels  organelle genomes  Welwitschia  
Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat 期刊论文
NEW PHYTOLOGIST, 2019, 卷号: 222, 期号: 2, 页码: 1061-1075
作者:  Mower, Jeffrey P.;  Ma, Peng-Fei;  Grewe, Felix;  Taylor, Alex;  Michael, Todd P.;  VanBuren, Robert;  Qiu, Yin-Long
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evolutionary stasis  gene loss  inversion  Isoetes (quillworts)  Lycopodiaceae (clubmosses)  Lycopodiophyta (lycophytes)  plastid genome (plastome)  Selaginella (spikemosses)  
Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide 期刊论文
SCIENTIFIC REPORTS, 2019, 卷号: 9, 页码: 11
作者:  Fu, Chao-Nan;  Wu, Chung-Shien;  Ye, Lin-Jiang;  Mo, Zhi-Qiong;  Liu, Jie;  Chang, Yu-Wen;  Li, De-Zhu;  Chaw, Shu-Miaw;  Gao, Lian-Ming
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Assembly and comparative analyses of the mitochondrial genome of Castanospermum australe (Papilionoideae, Leguminosae) 期刊论文
AUSTRALIAN SYSTEMATIC BOTANY, 2019, 卷号: 32, 期号: 5-6, 页码: 484-494
作者:  Zhang, Rong;  Jin, Jian-Jun;  Moore, Michael J.;  Yi, Ting-Shuang
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genome skimming  legume  mitochondrion  Moreton Bay chestnut  phylogeny  read-pair mapping  
Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication 期刊论文
TREE GENETICS & GENOMES, 2017, 卷号: 13, 期号: 2, 页码: 41
作者:  Wang, Yin-Huan;  Qu, Xiao-Jian;  Chen, Si-Yun;  Li, De-Zhu;  Yi, Ting-Shuang
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Plastome  Ir Expansion/contraction  Repeats  Mimosoideae  Sequence Divergence  Phylogenomics  
Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 卷号: 105, 期号: 1, 页码: 166-176
作者:  Zhao, Lei;  Li, Xia;  Zhang, Ning;  Zhang, Shu-Dong;  Yi, Ting-Shuang;  Ma, Hong;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(2059Kb)  |  收藏  |  浏览/下载:379/72  |  提交时间:2016/12/21
Coalescence  Rosids Phylogenomics  Nuclear Genes  Gene Tree  Species Tree