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Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change 期刊论文
MOLECULAR ECOLOGY, 2023, 卷号: 32, 期号: 11, 页码: 2850-2868
作者:  Qin,Sheng-Yuan;  Zuo,Zheng-Yu;  Guo,Cen;  Du,Xin-Yu;  Liu,Shui-Yin;  Yu,Xiang-Qin;  Xiang,Xiao-Guo;  Rong,Jun;  Liu,Bing;  Liu,Zhi-Fang;  Ma,Peng-Fei;  Li,De-Zhu
浏览  |  Adobe PDF(12802Kb)  |  收藏  |  浏览/下载：14/1  |  提交时间：2024/07/10
East Asian monsoon  evergreen broadleaved forests  genome resequencing  Lauraceae  Litsea complex  single-nucleotide variants  SOUTHERN CHINA EVIDENCE  NORTHERN-HEMISPHERE  MOLECULAR PHYLOGENY  SPECIES RICHNESS  LITSEA COMPLEX  R PACKAGE  LAURACEAE  EOCENE  TERTIARY  BIOGEOGRAPHY  
Continuous genetic adaptation to high elevations of alpine bamboos in the Hengduan Mountains, Southwest China 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
作者:  Luo,Li-Ying;  Jin,Gui-Hua;  Ma,Peng-Fei;  Li,De-Zhu
浏览  |  Adobe PDF(1348Kb)  |  收藏  |  浏览/下载：14/8  |  提交时间：2024/07/10
alpine bamboos  continuum evolution  Hengduan Mountains  high-elevation adaptation  transcriptome  HIGH-ALTITUDE ADAPTATION  PHYLOGENETIC ANALYSIS  EVOLUTION  DUPLICATIONS  GENERATION  POLYPLOIDY  SELECTION  
Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia 期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 147-155
作者:  Lv,Shi-Yu;  Ye,Xia-Ying;  Li,Zhong-Hu;  Ma,Peng-Fei;  Li,De-Zhu
浏览  |  Adobe PDF(2234Kb)  |  收藏  |  浏览/下载：84/22  |  提交时间：2024/05/09
Fargesia  Genome-skimming  DNA barcoding  Plastome  Ribosomal DNA  WHOLE CHLOROPLAST GENOMES  RNA-SEQ DATA  ARUNDINARIEAE POACEAE  BAMBUSOIDEAE  TEMPERATE  PLATFORM  
Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos 期刊论文
PLANTA, 2022, 卷号: 256, 期号: 3, 页码: 53
作者:  Niu, Liang-Zhong;  Xu, Wei;  Ma, Peng-Fei;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(3169Kb)  |  收藏  |  浏览/下载：55/9  |  提交时间：2024/04/30
DNA methylation  Gene expression  Internode elongation  Jasmonic acid  Woody bamboos  PHENYLALANINE AMMONIA-LYASE  MOLECULAR CHARACTERIZATION  CYTOSINE METHYLTRANSFERASE  INTERNODE ELONGATION  TRANSCRIPTION FACTOR  H3 LYSINE-9  ARABIDOPSIS  EXPRESSION  DEMETHYLATION  PROTEIN  
Plastid phylogenomics shed light on intergeneric relationships and spatiotemporal evolutionary history of Melocanninae (Poaceae: Bambusoideae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 3, 页码: 640-652
作者:  Zhou, Meng-Yuan;  Liu, Jing-Xia;  Ma, Peng-Fei;  Yang, Jun-Bo;  Li, De-Zhu
浏览  |  Adobe PDF(3608Kb)  |  收藏  |  浏览/下载：91/8  |  提交时间：2024/03/11
Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12, 页码: 824672
作者:  Wu, Hong;  Yang, Jun-Bo;  Liu, Jing-Xia;  Li, De-Zhu;  Ma, Peng-Fei
浏览  |  Adobe PDF(6314Kb)  |  收藏  |  浏览/下载：10/6  |  提交时间：2024/08/21
Poales  phylogenomic conflict  plastome  mitochondrial  nuclear  EVOLUTIONARY SIGNIFICANCE  PLASTID GENOMES  NUCLEAR GENES  SEQUENCE DATA  TREE  MITOCHONDRIAL  DIVERSIFICATION  FAMILIES  RBCL  CLASSIFICATION  
New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 12, 页码: 5752-5768
作者:  Jin,Guihua;  Ma,Peng-Fei;  Wu,Xiaopei;  Gu,Lianfeng;  Long,Manyuan;  Zhang,Chengjun;  Li,De-Zhu
收藏  |  浏览/下载：159/0  |  提交时间：2022/04/02
fast stem growth  orphan genes  de novo genes  WGD  woody bamboos  evolutionary innovation  EVOLUTIONARY ORIGIN  DROSOPHILA-MELANOGASTER  PHYLOGENETIC ANALYSIS  VERTEBRATE EVOLUTION  RAPID EVOLUTION  HUMAN TISSUE  YOUNG GENES  TRANSCRIPTION  EXPRESSION  HOURGLASS  
Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1183-1197
作者:  Ye,Xia-Ying;  Ma,Peng-Fei;  Guo,Cen;  Li,De-Zhu
收藏  |  浏览/下载：86/0  |  提交时间：2022/04/02
plastome  ddRAD  Fargesia  phylogenetic incongruence  reticulate evolution  Yushania  CONFLICTING GENE TREES  BAMBOOS POACEAE  ARUNDINARIEAE POACEAE  PHYLOGENETIC-RELATIONSHIPS  MORPHOLOGICAL EVOLUTION  BALANCING SELECTION  THAMNOCALAMUS GROUP  ALLIES GRAMINEAE  RADSEQ DATA  GBSSI GENE  
Comparative plastomic analysis and insights into the phylogeny of Salvia (Lamiaceae) 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 1, 页码: 15-26
作者:  Wu,Hong;  Ma,Peng-Fei;  Li,Hong-Tao;  Hu,Guo-Xiong;  Li,De-Zhu
收藏  |  浏览/下载：94/0  |  提交时间：2022/04/02
Lamiaceae  Salvia subg. Glutinaria  Plastome  Phylogeny  COMPLETE CHLOROPLAST GENOME  ANCHORED HYBRID ENRICHMENT  SUBGENUS CALOSPHACE  STAMINAL EVOLUTION  SEQUENCE  DNA  MECHANISM  RADIATION  INFERENCE  SELECTION  
Plastid phylogenomic insights into relationships of all flowering plant families 期刊论文
BMC BIOLOGY, 2021, 卷号: 19, 期号: 1, 页码: 232
作者:  Li,Hong-Tao;  Luo,Yang;  Gan,Lu;  Ma,Peng-Fei;  Gao,Lian-Ming;  Yang,Jun-Bo;  Cai,Jie;  Gitzendanner,Matthew A.;  Fritsch,Peter W.;  Zhang,Ting;  Jin,Jian-Jun;  Zeng,Chun-Xia;  Wang,Hong;  Yu,Wen-Bin;  Zhang,Rong;  van der Bank,Michelle;  Olmstead,Richard G.;  Hollingsworth,Peter M.;  Chase,Mark W.;  Soltis,Douglas E.;  Soltis,Pamela S.;  Yi,Ting-Shuang;  Li,De-Zhu
浏览  |  Adobe PDF(2636Kb)  |  收藏  |  浏览/下载：172/39  |  提交时间：2022/04/02
Mesangiospermae  Tree of life  Interfamilial relationships  Plastome  PPA II  MULTIPLE SEQUENCE ALIGNMENT  EARLY DIVERSIFICATION  CHLOROPLAST GENOME  SEED PLANTS  SCALE DATA  ANGIOSPERMS  GENES  PHYLOGENETICS  RBCL  RESOLVES