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Plastome Reduction in the Only Parasitic Gymnosperm Parasitaxus Is Due to Losses of Photosynthesis but Not Housekeeping Genes and Apparently Involves the Secondary Gain of a Large Inverted Repeat 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2019, 卷号: 11, 期号: 10, 页码: 2789-2796
作者:  Qu, Xiao-Jian;  Fan, Shou-Jin;  Wicke, Susann;  Yi, Ting-Shuang
Adobe PDF(1214Kb)  |  收藏  |  浏览/下载：140/36  |  提交时间：2020/03/18
plastome  parasitism  mycoheterotrophy  gene loss  Parasitaxus  
Chloroplast phylogenomics of liverworts: a reappraisal of the backbone phylogeny of liverworts with emphasis on Ptilidiales 期刊论文
CLADISTICS, 2019, 页码: 10
作者:  Yu, Ying;  Yang, Jun-Bo;  Ma, Wen-Zhang;  Pressel, Silvia;  Liu, Hong-Mei;  Wu, Yu-Huan;  Schneider, Harald
Adobe PDF(422Kb)  |  收藏  |  浏览/下载：144/23  |  提交时间：2019/09/10
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes 期刊论文
PLANT METHODS, 2019, 卷号: 15, 页码: 12
作者:  Qu, Xiao-Jian;  Moore, Michael J.;  Li, De-Zhu;  Yi, Ting-Shuang
Adobe PDF(1302Kb)  |  收藏  |  浏览/下载：267/28  |  提交时间：2019/07/29
PGA  Plastome  Batch annotation  Accuracy  BLAST  Software  Algorithms  
Alternative splicing coupled to nonsense-mediated mRNA decay contributes to the high-altitude adaptation of maca (Lepidium meyenii) 期刊论文
GENE, 2019, 卷号: 694, 页码: 7-18
作者:  Shi, Yong;  Su, Zechun;  Yang, Hong;  Wang, Wenzhi;  Jin, Guihua;  He, Guiqing;  Siddique, Abu Nasar;  Zhang, Liangsheng;  Zhu, Andan;  Xue, Runguang;  Zhang, Chengjun
Adobe PDF(1643Kb)  |  收藏  |  浏览/下载：238/29  |  提交时间：2019/07/29
Alpine plants  Post-transcriptome  Intron retention  Alternative 3 ' splice site  Long non-coding RNA  Positive selection  
Complete loss of RNA editing from the plastid genome and most highly expressed mitochondrial genes of Welwitschia mirabilis 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2019, 卷号: 62, 期号: 4, 页码: 498-506
作者:  Fan, Weishu;  Guo, Wenhu;  Funk, Lexis;  Mower, Jeffrey P.;  Zhu, Andan
浏览  |  Adobe PDF(514Kb)  |  收藏  |  浏览/下载：112/26  |  提交时间：2019/07/29
RNA editing  massive loss  expression levels  organelle genomes  Welwitschia  
Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat 期刊论文
NEW PHYTOLOGIST, 2019, 卷号: 222, 期号: 2, 页码: 1061-1075
作者:  Mower, Jeffrey P.;  Ma, Peng-Fei;  Grewe, Felix;  Taylor, Alex;  Michael, Todd P.;  VanBuren, Robert;  Qiu, Yin-Long
浏览  |  Adobe PDF(767Kb)  |  收藏  |  浏览/下载：149/25  |  提交时间：2019/06/24
evolutionary stasis  gene loss  inversion  Isoetes (quillworts)  Lycopodiaceae (clubmosses)  Lycopodiophyta (lycophytes)  plastid genome (plastome)  Selaginella (spikemosses)  
Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide 期刊论文
SCIENTIFIC REPORTS, 2019, 卷号: 9, 页码: 11
作者:  Fu, Chao-Nan;  Wu, Chung-Shien;  Ye, Lin-Jiang;  Mo, Zhi-Qiong;  Liu, Jie;  Chang, Yu-Wen;  Li, De-Zhu;  Chaw, Shu-Miaw;  Gao, Lian-Ming
浏览  |  Adobe PDF(3412Kb)  |  收藏  |  浏览/下载：356/102  |  提交时间：2019/03/25
Assembly and comparative analyses of the mitochondrial genome of Castanospermum australe (Papilionoideae, Leguminosae) 期刊论文
AUSTRALIAN SYSTEMATIC BOTANY, 2019, 卷号: 32, 期号: 5-6, 页码: 484-494
作者:  Zhang, Rong;  Jin, Jian-Jun;  Moore, Michael J.;  Yi, Ting-Shuang
浏览  |  Adobe PDF(2840Kb)  |  收藏  |  浏览/下载：136/18  |  提交时间：2020/03/26
genome skimming  legume  mitochondrion  Moreton Bay chestnut  phylogeny  read-pair mapping  
Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication 期刊论文
TREE GENETICS & GENOMES, 2017, 卷号: 13, 期号: 2, 页码: 41
作者:  Wang, Yin-Huan;  Qu, Xiao-Jian;  Chen, Si-Yun;  Li, De-Zhu;  Yi, Ting-Shuang
浏览  |  Adobe PDF(5516Kb)  |  收藏  |  浏览/下载：203/31  |  提交时间：2017/07/10
Plastome  Ir Expansion/contraction  Repeats  Mimosoideae  Sequence Divergence  Phylogenomics  
Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae) 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2017, 卷号: 9, 期号: 4, 页码: 1110-1119
作者:  Qu, Xiao-Jian;  Wu, Chung-Shien;  Chaw, Shu-Miaw;  Yi, Ting-Shuang;  Yi TS(伊廷双)
浏览  |  Adobe PDF(688Kb)  |  收藏  |  浏览/下载：178/40  |  提交时间：2017/07/10
Cupressaceae  Cupressoideae  Isomeric Plastomes  Plastomic Complexity  Repeat