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Evolutionary history of two evergreen Rhododendron species as revealed by chromosome-level genome assembly 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1123707
作者:  Wu,Xiaopei;  Zhang,Lu;  Wang,Xiuyun;  Zhang,Rengang;  Jin,Guihua;  Hu,Yanting;  Yang,Hong;  Wu,Zhenzhen;  Ma,Yongpeng;  Zhang,Chengjun;  Wang,Jihua
浏览  |  Adobe PDF(9308Kb)  |  收藏  |  浏览/下载：116/19  |  提交时间：2024/05/09
Rhododendron delavayi  Rhododendron irroratum  genome evolution  gene duplication  anthocyanin biosynthesis  NBS-encoding genes  MULTIPLE SEQUENCE ALIGNMENT  RICH REPEAT GENES  PHYLOGENETIC ANALYSIS  ARABIDOPSIS-THALIANA  WHOLE-GENOME  TOOL  PIGMENTATION  DUPLICATION  RESISTANCE  ACCURATE  
Plastome characteristics and species identification of Chinese medicinal wintergreens (Gaultheria, Ericaceae) 期刊论文
PLANT DIVERSITY, 2022, 卷号: 44, 期号: 6, 页码: 519-529
作者:  Xu, Yan-Ling;  Shen, Hao-Hua;  Du, Xin-Yu;  Lu, Lu
浏览  |  Adobe PDF(3108Kb)  |  收藏  |  浏览/下载：83/19  |  提交时间：2024/04/30
DNA barcodes  Gene duplication  Plastome  Repeat sequences  Structural variation  CHLOROPLAST GENOME  PHYLOGENETIC ANALYSIS  INVERTED REPEAT  EVOLUTION  SEQUENCE  DNA  SOFTWARE  INSIGHTS  REARRANGEMENTS  ORGANIZATION  
Gene fusion as an important mechanism to generate new genes in the genus Oryza 期刊论文
GENOME BIOLOGY, 2022, 卷号: 23, 期号: 1, 页码: 130
作者:  Zhou, Yanli;  Zhang, Chengjun;  Zhang, Li;  Ye, Qiannan;  Liu, Ningyawen;  Wang, Muhua;  Long, Guangqiang;  Fan, Wei;  Lon, Manyuan;  Wing, Rod A.
浏览  |  Adobe PDF(2953Kb)  |  收藏  |  浏览/下载：79/16  |  提交时间：2024/04/30
Fusion gene  Oryza  Evolutionary patterns  Phenotype  TRANSPOSABLE ELEMENTS  RAPID EVOLUTION  CHIMERIC GENES  RICE GENOME  DUPLICATION  EXPRESSION  RETROPOSITION  ORIGINATION  COMPLEXITY  GLABERRIMA  
Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae 期刊论文
ANNALS OF BOTANY, 2022
作者:  Zhao, Lei;  Yang, Ying-Ying;  Qu, Xiao-Jian;  Ma, Hong;  Hu, Yi;  Li, Hong-Tao;  Yi, Ting-Shuang;  Li, De-Zhu
浏览  |  Adobe PDF(1678Kb)  |  收藏  |  浏览/下载：94/15  |  提交时间：2024/04/30
Araceae  diversification  phylogenomics  WGDs  adaptation  TRAIT-DEPENDENT SPECIATION  GENE DUPLICATION  ANGIOSPERM DIVERSIFICATION  PHYLOGENOMIC ANALYSES  NUCLEAR GENES  POLYPLOIDY  EVOLUTIONARY  FAMILY  RATES  TOOL  
High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 期号: 12, 页码: 2544-2560
作者:  Wang,Xiuyun;  Gao,Yuan;  Wu,Xiaopei;  Wen,Xiaohui;  Li,Danqing;  Zhou,Hong;  Li,Zheng;  Liu,Bing;  Wei,Jianfen;  Chen,Fei;  Chen,Feng;  Zhang,Chengjun;  Zhang,Liangsheng;  Xia,Yiping
收藏  |  浏览/下载：130/0  |  提交时间：2022/04/02
Azalea  Rhododendron ovatum  altitude  adaptability  floral scent  terpene synthase (TPS)  tandem duplication  defence response  PHYLOGENETIC ANALYSIS  TERPENE SYNTHASES  PLANT VOLATILES  SALICYLIC-ACID  JASMONIC ACID  WHOLE-GENOME  GENE  DIVERSITY  TOOL  TRANSCRIPTOME  
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae 期刊论文
MOLECULAR PLANT, 2021, 卷号: 14, 期号: 5, 页码: 748-773
作者:  Zhao,Yiyong;  Zhang,Rong;  Jiang,Kai-Wen;  Qi,Ji;  Hu,Yi;  Guo,Jing;  Zhu,Renbin;  Zhang,Taikui;  Egan,Ashley N.;  Yi,Ting-Shuang;  Huang,Chien-Hsun;  Ma,Hong
收藏  |  浏览/下载：131/0  |  提交时间：2022/04/02
Fabaceae  Leguminosae  nuclear phylogeny  divergence times  whole-genome duplication  rhizobial nodulation  COMPARATIVE GENOMICS  PHYLOGENETIC PERSPECTIVES  EARLY DIVERSIFICATION  PENALIZED LIKELIHOOD  ANCESTRAL POLYPLOIDY  MOLECULAR EVOLUTION  LOTUS-JAPONICUS  ANALYSES REVEAL  GENE  LEGUMINOSAE  
Expansion and expression diversity of FAR1/FRS-like genes provides insights into flowering time regulation in roses 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 2, 页码: 173-179
作者:  Zhong,Mi-Cai;  Jiang,Xiao-Dong;  Cui,Wei-Hua;  Hu,Jin-Yong
Adobe PDF(3291Kb)  |  收藏  |  浏览/下载：296/60  |  提交时间：2022/04/02
Rose  FAR1/FRS-Like genes  Gene family expansion  Flowering time  Shoot growth behavior  RED ELONGATED HYPOCOTYL3  TRANSCRIPTION FACTORS  ARABIDOPSIS FHY3  LIGHT  RESPONSES  BIOSYNTHESIS  DUPLICATION  PHYTOCHROME  EVOLUTION  ROKSN  
Phylogeny and evolution of chloroplast tRNAs in Adoxaceae 期刊论文
ECOLOGY AND EVOLUTION, 2021, 卷号: 11, 期号: 3, 页码: 1294-1309
作者:  Zhong,Qiu-Yi;  Fu,Xiao-Gang;  Zhang,Ting-Ting;  Zhou,Tong;  Yue,Ming;  Liu,Jian-Ni;  Li,Zhong-Hu
Adobe PDF(2392Kb)  |  收藏  |  浏览/下载：159/31  |  提交时间：2022/04/02
anticodon  chloroplast tRNA  intron  phylogeny  transition  transversion  NONOPTIMAL CODON USAGE  HORIZONTAL TRANSFER  GENE DUPLICATION  GENOME  MITOCHONDRIAL  ORIGIN  TRANSLATION  SEQUENCES  ACID  DNA  
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 2, 页码: 341-351
作者:  Jin,Gui-Hua;  Zhou,Yan-Li;  Yang,Hong;  Hu,Yan-Ting;  Shi,Yong;  Li,Ling;  Siddique,Abu N.;  Liu,Chang-Ning;  Zhu,An-Dan;  Zhang,Cheng-Jun;  Li,De-Zhu
收藏  |  浏览/下载：119/0  |  提交时间：2022/04/02
comparative genomics  origin  orphan gene  transposable element  LINEAGE-SPECIFIC GENES  EVOLUTION  ORIGIN  IDENTIFICATION  EMERGENCE  PROTEIN  DUPLICATION  ALIGNMENT  SETS  
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 卷号: 34, 期号: 2, 页码: 262-281
作者:  Xiang,Yezi;  Huang,Chien-Hsun;  Hu,Yi;  Wen,Jun;  Li,Shisheng;  Yi,Tingshuang;  Chen,Hongyi;  Xiang,Jun;  Ma,Hong
Adobe PDF(5900Kb)  |  收藏  |  浏览/下载：303/58  |  提交时间：2017/10/23
Northeastern Washington-state  Sequence Data  Molecular Phylogenetics  British-columbia  Divergence Times  Prunus Rosaceae  Ribosomal Dna  Early Eocene  Gene Data  Polyploidy  Coalescence  Fruit Evolution  Molecular Clock  Nuclear Phylogeny  Rosaceae  Genome Duplication