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Plastid NDH Pseudogenization and Gene Loss in a Recently Derived Lineage from the Largest Hemiparasitic Plant Genus Pedicularis (Orobanchaceae ) 期刊论文
PLANT AND CELL PHYSIOLOGY, 2021, 卷号: 62, 期号: 6, 页码: 971-984
作者:  Li,Xin;  Yang,Jun-Bo;  Wang,Hong;  Song,Yu;  Corlett,Richard T.;  Yao,Xin;  Li,De-Zhu;  Yu,Wen-Bin
浏览  |  Adobe PDF(1695Kb)  |  收藏  |  浏览/下载：137/46  |  提交时间：2022/04/02
Hemiparasite  IR expansion  NA(D)H dehydrogenase-like complex  Orobanchaceae  Pseudogenization  Relaxation of selection  ACETYL-COA CARBOXYLASE  INVERTED REPEAT  LIFE-STYLE  ACCD GENE  EVOLUTION  GENOME  DIVERSITY  PHYLOGENY  SELECTION  INSIGHTS  
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes 期刊论文
GENOME BIOLOGY, 2020
作者:  Jin, Jian-Jun;  Yu, Wen-Bin;  Yang, Jun-Bo;  Song, Yu;  dePamphilis, Claude W.;  Yi, Ting-Shuang;  Li, De-Zhu
浏览  |  Adobe PDF(1951Kb)  |  收藏  |  浏览/下载：302/29  |  提交时间：2021/01/05
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes 期刊论文
PLANT METHODS, 2019, 卷号: 15, 页码: 12
作者:  Qu, Xiao-Jian;  Moore, Michael J.;  Li, De-Zhu;  Yi, Ting-Shuang
浏览  |  Adobe PDF(1302Kb)  |  收藏  |  浏览/下载：331/35  |  提交时间：2019/07/29
PGA  Plastome  Batch annotation  Accuracy  BLAST  Software  Algorithms  
DNA barcoding of East Asian Amentotaxus (Taxaceae): Potential new species and implications for conservation 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2017, 卷号: 55, 期号: 1, 页码: 16-24
作者:  Gao, Lian-Ming;  Li, Yan;  Loc Ke Phan;  Yan, Li-Jun;  Thomas, Philip;  Long Ke Phan;  Moller, Michael;  Li, De-Zhu
浏览  |  Adobe PDF(496Kb)  |  收藏  |  浏览/下载：301/95  |  提交时间：2017/04/19
Amentotaxus  Biodiversity Conservation  Dna Barcoding  New Species Discovery  Species Discrimination  
Lineage-Specific Reductions of Plastid Genomes in an Orchid Tribe with Partially and Fully Mycoheterotrophic Species 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2016, 卷号: 8, 期号: 7, 页码: 2164-2175
作者:  Feng, Yan-Lei;  Wicke, Susann;  Li, Jian-Wu;  Han, Yu;  Lin, Choun-Sea;  Li, De-Zhu;  Zhou, Ting-Ting;  Huang, Wei-Chang;  Huang, Lu-Qi;  Jin, Xiao-Hua
浏览  |  Adobe PDF(1102Kb)  |  收藏  |  浏览/下载：182/51  |  提交时间：2016/11/04
Heterotrophy  Plastid Genome Reduction  Neottieae  Orchidaceae  Relaxed Selection  
Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2016, 卷号: 8, 期号: 3, 页码: 932-945
作者:  Luo, Yang;  Ma, Peng-Fei;  Li, Hong-Tao;  Yang, Jun-Bo;  Wang, Hong;  Li, De-Zhu
浏览  |  Adobe PDF(3457Kb)  |  收藏  |  浏览/下载：281/63  |  提交时间：2016/08/22
Complete Plastid Genome  Genome Evolution  Phylogenomics  Alismatales  Basal Monocots  
Comparative Chloroplast Genomes of Camellia Species 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 8
作者:  Yang, Jun-Bo;  Yang, Shi-Xiong;  Li, Hong-Tao;  Yang, Jing;  Li, De-Zhu
浏览  |  Adobe PDF(2156Kb)  |  收藏  |  浏览/下载：612/89  |  提交时间：2013/11/12
Bayesian Phylogenetic Inference  Multiple Sequence Alignment  Plastid Genomes  Inverted Repeat  Structural Organization  Nicotiana-tabacum  Vascular Plants  High-throughput  Dna  Theaceae  
The expression and phylogenetic analysis of four AP3-like paralogs in the stamens, carpels, and single-whorl perianth of the paleoherb Asarum caudigerum 期刊论文
MOLECULAR BIOLOGY REPORTS, 2013, 卷号: 40, 期号: 8, 页码: 4691-4699
作者:  Zhao, Yin-He;  Larson-Rabin, Zachary;  Li, De-Zhu;  Wang, Guo-Ying;  Peng, Seng;  Li, Cheng-Yun
浏览  |  Adobe PDF(791Kb)  |  收藏  |  浏览/下载：456/120  |  提交时间：2013/10/16
Asarum Caudigerum  Ap3-like  Gene Duplication  Pseudogene  Neofunctionalization  Subfunctionalization  
Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2013, 卷号: 13, 期号: 1, 页码: 84
作者:  Yang, Jun-Bo;  Tang, Min;  Li, Hong-Tao;  Zhang, Zhi-Rong;  Li, De-Zhu
浏览  |  Adobe PDF(1565Kb)  |  收藏  |  浏览/下载：821/157  |  提交时间：2013/06/08
Chloroplast Genome  Phylogenomics  Species Identification  Organelle-scale Barcodes  Phylogeny  Divergence Hotspot  
Phylogenetic relationships in the Pterygiella complex (Orobanchaceae) inferred from molecular and morphological evidence 期刊论文
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2013, 卷号: 171, 期号: 3, 页码: 491-507
作者:  Dong, Li-Na;  Wang, Hong;  Wortley, Alexandra H.;  Lu, Lu;  Li, De-Zhu
浏览  |  Adobe PDF(1354Kb)  |  收藏  |  浏览/下载：740/217  |  提交时间：2013/06/08
Eastern Asia  Fruit  Genic Regions  Hemiparasite  Phylogenetic Analysis  Phtheirospermum  Pseudobartsia  Xizangia