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Phylotranscriptomic analyses reveal deep gene tree discordance in Camellia (Theaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2023, 卷号: 188, 页码: 107912
作者:  Zhang,Qiong;  Folk,Ryan A.;  Mo,Zhi-Qiong;  Ye,Hang;  Zhang,Zhao-Yuan;  Peng,Hua;  Zhao,Jian-Li;  Yang,Shi-Xiong;  Yu,Xiang-Qin
浏览  |  Adobe PDF(2003Kb)  |  收藏  |  浏览/下载：44/14  |  提交时间：2024/07/25
Camellia  Gene tree discordance  Transcriptome  Rapid diversification  Selective pressure  RNA-SEQ DATA  PHYLOGENETIC ANALYSIS  NUCLEAR GENES  SEQUENCE  EVOLUTION  RESOLUTION  HISTORY  INFERENCE  ALGORITHM  SELECTION  
Global consortium for the classification of fungi and fungus-like taxa 期刊论文
MYCOSPHERE, 2023, 卷号: 14, 期号: 1, 页码: 1960-2012
作者:  Hyde,K. D.;  Abdel-Wahab,M. A.;  Abdollahzadeh,J.;  Abeywickrama,P. D.;  Absalan,S.;  Afshari,N.;  Ainsworth,A. M.;  Akulov,O. Y.;  Aleoshin,V. V.;  Al-Sadi,A. M.;  Alvarado,P.;  Alves,A.;  Alves-Silva,G.;  Amalfi,M.;  Amira,Y.;  Amuhenage,T. B.;  Anderson,J. L.;  Antonin,V;  Aouali,S.;  Aptroot,A.;  Apurillo,C. C. S.;  Araujo,J. P. M.;  Ariyawansa,H. A.;  Armand,A.;  Arumugam,E.;  Asghari,R.;  Assis,D. M. A.;  Atienza,V;  Avasthi,S.;  Azevedo,E.;  Bahkali,A. H.;  Bakhshi,M.;  Banihashemi,Z.;  Bao,D. F.;  Baral,H. O.;  Barata,M.;  Barbosa,F. R.;  Barbosa,R. N.;  Barreto,R. W.;  Baschien,C.;  Belamesiatseva,D. B.;  Bennett Reuel,M.;  Bera,I;  Bezerra,J. D. P.;  Bezerra,J. L.;  Bhat,D. J.;  Bhunjun,C. S.;  Bianchinotti,M.,V;  Blaszkowski,J.;  Blondelle,A.;  Boekhout,T.;  Bonito,G.;  Boonmee,S.;  Boonyuen,N.;  Bregant,C.;  Buchanan,P.;  Bundhun,D.;  Burgaud,G.;  Burgess,T.;  Buyck,B.;  Cabarroi-Hernandez,M.;  Caceres,M. E. S.;  Caeiro,M. F.;  Cai,L.;  Cai,M. F.;  Calabon,M. S.;  Calaca,F. J. S.;  Callalli,M.;  Camara,M. P. S.;  Cano-Lira,J. F.;  Cantillo,T.;  Cao,B.;  Carlavilla,J. R.;  Carvalho,A.;  Castaneda-Ruiz,R. F.;  Castlebury,L.;  Castro-Jauregui,O.;  Catania,M. D.,V;  Cavalcanti,L. H.;  Cazabonne,J.;  Cedeno-Sanchez,M. L.;  Chaharmiri-Dokhaharani,S.;  Chaiwan,N.;  Chakraborty,N.;  Chaverri,P.;  Cheewangkoon,R.;  Chen,C.;  Chen,C. Y.;  Chen,K. H.;  Chen,J.;  Chen,Q.;  Chen,W. H.;  Chen,Y. P.;  Chethana,K. W. T.;  Coleine,C.;  Conde,T. O.;  Corazon-Guivin,M. A.;  Cortes-Perez,A.;  Costa-Rezende,D. H.;  Courtecuisse,R.;  Crouch,J. A.;  Crous,P. W.;  Cui,B. K.;  Cui,Y. Y.;  da Silva,D. K. A.;  da Silva,G. A.;  da Silva,I. R.;  da Silva,R. M. F.;  da Silva Santos,A. C.;  Dai,D. Q.;  Dai,Y. C.;  Damm,U.;  Darmostuk,V;  Zoha,Daroodi;  Das,K.;  Das,K.;  Davoodian,N.;  Davydov,E. A.;  Dayarathne,M. C.;  Decock,C.;  de Groot,M. D.;  De Kesel,A.;  dela Cruz,T. E. E.;  De Lange,R.;  Delgado,G.;  Denchev,C. M.;  Denchev,T. T.;  de Oliveira,N. T.;  de Silva,N.,I;  de Souza,F. A.;  Dentinger,B.;  Devadatha,B.;  Dianese,J. C.;  Dima,B.;  Diniz,A. G.;  Dissanayake,A. J.;  Dissanayake,L. S.;  Dogan,H. H.;  Doilom,M.;  Dolatabadi,S.;  Dong,W.;  Dong,Z. Y.;  Dos Santos,L. A.;  Drechsler-Santos,E. R.;  Du,T. Y.;  Dubey,M. K.;  Dutta,A. K.;  Egidi,E.;  Elliott,T. F.;  Elshahed,M. S.;  Erdogdu,M.;  Ertz,D.;  Etayo,J.;  Evans,H. C.;  Fan,X. L.;  Fan,Y. G.;  Fedosova,A. G.;  Fell,J.;  Fernandes,I;  Firmino,A. L.;  Fiuza,P. O.;  Flakus,A.;  Fragoso de Souza,C. A.;  Frisvad,J. C.;  Fryar,S. C.;  Gabaldon,T.;  Gajanayake,A. J.;  Galindo,L. J.;  Gannibal,P. B.;  Garcia,D.;  Garcia-Sandoval,S. R.;  Garrido-Benavent,I;  Garzoli,L.;  Gautam,A. K.;  Ge,Z-W;  Gene,D. J.;  Gentekaki,E.;  Ghobad-Nejhad,M.;  Giachini,A. J.;  Gibertoni,T. B.;  Goes-Neto,A.;  Gomdola,D.;  Gomes de Farias,A. R.;  Gorjon,S. P.;  Goto,B. T.;  Granados-Montero,M. M.;  Griffith,G. W.;  Groenewald,J. Z.;  Groenewald,M.;  Grossart,H. P.;  Gueidan,C.;  Gunarathne,A.;  Gunaseelan,S.;  Gusmao,L. F. P.;  Gutierrez,A. C.;  Guzman-Davalos,L.;  Haelewaters,D.;  Halling,R.;  Han,Y. F.;  Hapuarachchi,K. K.;  Harder,C. B.;  Harrington,T. C.;  Hattori,T.;  He,M. Q.;  He,S.;  He,S. H.;  Healy,R.;  Herandez-Restrepo,M.;  Heredia,G.;  Hodge,K. T.;  Holgado-Rojas,M.;  Hongsanan,S.;  Horak,E.;  Hosoya,T.;  Houbraken,J.;  Huang,S. K.;  Huanraluek,N.;  Hur,J. S.;  Hurdeal,V. G.;  Hustad,V. P.;  Iotti,M.;  Iturriaga,T.;  Jafar,E.;  Janik,P.;  Jany,J. L.;  Jayalal,R. G. U.;  Jayasiri,S. C.;  Jayawardena,R. S.;  Jeewon,R.;  Jeronimo,G. H.;  Jesus,A. L.;  Jin,J.;  Johnston,P. R.;  Jones,E. B. G.;  Joshi,Y.;  Justo,A.;  Kaishian,P.;  Kakishima,M.;  Kaliyaperumal,M.;  Kang,G. P.;  Kang,J. C.;  Karakehian,J. M.;  Karimi,O.;  Karpov,S. A.;  Karunarathna,S. C.;  Kaufmann,M.;  Kemler,M.;  Kezo,K.;  Khyaju,S.;  Kirchmair,M.;  Kirk,P. M.;  Kitaura,M. J.;  Klawonn,I;  Kolarik,M.;  Kong,A.;  Kuhar,F.;  Kukwa,M.;  Kumar,S.;  Kusan,I;  Lado,C.;  Larsson,K. H.;  Latha,K. P. D.;  Lee,H. B.;  Leonardi,M.;  Leontyev,D. L.;  Lestari,A. S.;  Li,C. J. Y.;  Li,D. W.;  Li,H.;  Li,H. Y.;  Li,L.;  Li,Q. R.;  Li,Q.;  Li,W. L.;  Li,Y.;  Li,Y. C.;  Li,Y. X.;  Liao,C. F.;  Liimatainen,K.;  Lim,Y. W.;  Lin,C. G.;  Linaldeddu,B. T.;  Linde,C. C.;  Linn,M. M.;  Liu,F.;  Liu,J. K.;  Liu,N. G.;  Liu,S.;  Liu,S. L.;  Liu,X. F.;  Liu,X. Y.;  Liu,X. Z.;  Liu,Z. B.;  Lu,L.;  Lu,Y. Z.;  Luangharn,T.;  Luangsa-ard,J. J.;  Lumbsch,H. T.;  Lumyong,S.;  Luo,L.;  Luo,M.;  Luo,Z. L.;  Ma,J.;  Machado,A. R.;  Madagammana,A. D.;  Madrid,H.;  Magurno,F.;  Magyar,D.;  Mahadevan,N.;  Maharachchikumbura,S. S. N.;  Maimaiti,Y.;  Malosso,E.;  Manamgoda,D. S.;  Manawasinghe,I. S.;  Mapook,A.;  Marasinghe,D. S.;  Mardones,M.;  Marin-Felix,Y.;  Marquez,R.;  Masigol,H.;  Matocec,N.;  May,T. W.;  McKenzie,E. H. C.;  Meiras-Ottoni,A.;  Melo,R. F. R.;  Mendes-Alvarenga,R. L.;  Mendieta,S.;  Meng,Q. F.;  Menkis,A.;  Menolli,N.,Jr.;  Mesic,A.;  Meza Calvo,J. G.;  Mikhailov,K.,V;  Miller,S. L.;  Moncada,B.;  Moncalvo,J. M.;  Monteiro,J. S.;  Monteiro,M.;  Mora-Montes,H. M.;  Moreau,P. A.;  Mueller,G. M.;  Mukhopadyay,S.;  Murugadoss,R.;  Nagy,L. G.;  Najafiniya,M.;  Nanayakkara,C. M.;  Nascimento,C. C.;  Nei,Y.;  Neves,M. A.;  Neuhauser,S.;  Niego,A. G. T.;  Nilsson,R. H.;  Niskanen,T.;  Niveiro,N.;  Noorabadi,M. T.;  Noordeloos,M. E.;  Norphanphoun,C.;  Nunez Otano,N. B.;  O'Donnell,R. P.;  Oehl,F.;  Olariaga,I;  Orlando,O. P.;  Pang,K. L.;  Papp,V;  Pawlowska,J.;  Peintner,U.;  Pem,D.;  Pereira,O. L.;  Perera,R. H.;  Perez-Moreno,J.;  Perez-Ortega,S.;  Peter,G.;  Phillips,A. J. L.;  Phonemany,M.;  Phukhamsakda,C.;  Phutthacharoen,K.;  Piepenbring,M.;  Pires-Zottarelli,C. L. A.;  Poinar,G.;  Posta,A.;  Prieto,M.;  Promputtha,I;  Quandt,C. A.;  Radek,R.;  Rahnama,K.;  Raj,K. N. A.;  Rajeshkumar,K. C.;  Rama,T.;  Rambold,G.;  Ramirez-Cruz,V;  Rasconi,S.;  Rathnayaka,A. R.;  Raza,M.;  Ren,G. C.;  Robledo,G. L.;  Rodriguez-Flakus,P.;  Ronikier,A.;  Rossi,W.;  Ryberg,M.;  Ryvarden,L. R.;  Salvador-Montoya,C. A.;  Samant,B.;  Samarakoon,B. C.;  Samarakoon,M. C.;  Sanchez-Castro,I;  Sanchez-Garcia,M.;  Sandoval-Denis,M.;  Santamaria,B.;  Santiago,A. L. C. M. A.;  Sarma,V. V.;  Savchenko,A.;  Savchenko,K.;  Saxena,R. K.;  Scholler,M.;  Schoutteten,N.;  Seifollahi,E.;  Selbmann,L.;  Selcuk,F.;  Senanayake,I. C.;  Seto,K.;  Shabashova,T. G.;  Shen,H. W.;  Shen,Y. M.;  Silva-Filho,A. G. S.;  Simmons,D. R.;  Singh,R.;  Sir,E. B.;  Song,C. G.;  Souza-Motta,C. M.;  Sruthi,O. P.;  Stadler,M.;  Stchigel,A. M.;  Stemler,J.;  Stephenson,S. L.;  Strassert,J. F. H.;  Su,H. L.;  Su,L.;  Suetrong,S.;  Sulistyo,B.;  Sun,Y. F.;  Sun,Y. R.;  Svantesson,S.;  Sysouphanthong,P.;  Takamatsu,S.;  Tan,T. H.;  Tanaka,K.;  Tang,A. M. C.;  Tang,X.;  Tanney,J. B.;  Tavakol,N. M.;  Taylor,J. E.;  Taylor,P. W. J.;  Tedersoo,L.;  Tennakoon,D. S.;  Thamodini,G. K.;  Thines,M.;  Thiyagaraja,V;  Thongklang,N.;  Tiago,P.,V;  Tian,Q.;  Tian,W. H.;  Tibell,L.;  Tibell,S.;  Tibpromma,S.;  Tkalcec,Z.;  Tomsovsky,M.;  Toome-Heller,M.;  Torruella,G.;  Tsurykau,A.;  Udayanga,D.;  Ulukapi,M.;  Untereiner,W. A.;  Uzunov,B. A.;  Valle,L. G.;  Van Caenegem,W.;  Van den Wyngaert,S.;  Van Vooren,N.;  Velez,P.;  Verma,R. K.;  Vieira,L. C.;  Vieira,W. A. S.;  Vizzini,A.;  Walker,A.;  Walker,A. K.;  Wanasinghe,D. N.;  Wang,C. G.;  Wang,K.;  Wang,S. X.;  Wang,X. Y.;  Wang,Y.;  Wannasawang,N.;  Wartchow,F.;  Wei,D. P.;  Wei,X. L.;  White,J. F.;  Wijayawardene,N. N.;  Wijesinghe,S. N.;  Wijesundara,D. S. A.;  Wisitrassameewong,K.;  Worthy,F. R.;  Wu,F.;  Wu,G.;  Wu,H. X.;  Wu,N.;  Wu,W. P.;  Wurzbacher,C.;  Xiao,Y. P.;  Xiong,Y. R.;  Xu,B.;  Xu,L. J.;  Xu,R.;  Xu,R. F.;  Xu,R. J.;  Xu,T. M.;  Yakovchenko,L.;  Yan,J. Y.;  Yang,H. D.;  Yang,J.;  Yang,Z. L.;  Yang,Y. H.;  Yapa,N.;  Yasanthika,E.;  Youssef,N. H.;  Yu,F. M.;  Yu,Q.;  Yu,X. D.;  Yu,Y. X.;  Yu,Z. F.;  Yuan,H. S.;  Yuan,Y.;  Yurkov,A.;  Zafari,D.;  Zamora,J. C.;  Zare,R.;  Zeng,M.;  Zeng,N. K.;  Zeng,X. Y.;  Zhang,F.;  Zhang,H.;  Zhang,J. F.;  Zhang,J. Y.;  Zhang,Q. Y.;  Zhang,S. N.;  Zhang,W.;  Zhang,Y.;  Zhang,Y. X.;  Zhao,C. L.;  Zhao,H.;  Zhao,Q.;  Zhao,R. L.;  Zhou,L. W.;  Zhou,M.;  Zhurbenko,M. P.;  Zin,H. H.;  Zucconi,L.
浏览  |  Adobe PDF(1105Kb)  |  收藏  |  浏览/下载：196/30  |  提交时间：2024/05/09
classification  nomenclature  scientific criticism  taxonomy  LEVEL PHYLOGENETIC CLASSIFICATION  INCORPORATING ANAMORPHIC FUNGI  FATTY-ACID-COMPOSITION  DNA-SEQUENCE DATA  NATURAL CLASSIFICATION  LEAF-LITTER  SPECIES RECOGNITION  IDENTIFICATION  NOMENCLATURE  TREE  
Species diversity of Hygrophorus in China and a phylogenetic study of the genus 期刊论文
MYCOSPHERE, 2023, 卷号: 14, 期号: 1, 页码: 1742-1834
作者:  Wang,C. Q.;  Zhang,M.;  He,X. L.;  Liu,J. W.;  Wei,T. Z.;  Liu,T. Z.;  Wang,K.;  Adamcik,S.;  Li,T. H.;  Deng,W. Q.
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Hygrophoraceae  Novel taxa  Phylogeny  Taxonomy  Waxcap  EDIBLE MUSHROOM  RUSSULA-COMPLEX  SEQUENCE DATA  SP. NOV.  AGARICALES  OLIVACEOUMBRINI  CLADES  
Endophytic Fungi Associated with Aquilaria sinensis (Agarwood) from China Show Antagonism against Bacterial and Fungal Pathogens 期刊论文
JOURNAL OF FUNGI, 2022, 卷号: 8, 期号: 11, 页码: 1197
作者:  Du, Tian-Ye;  Karunarathna, Samantha C.;  Zhang, Xian;  Dai, Dong-Qin;  Mapook, Ausana;  Suwannarach, Nakarin;  Xu, Jian-Chu;  Stephenson, Steven L.;  Elgorban, Abdallah M.;  Al-Rejaie, Salim;  Tibpromma, Saowaluck
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agarwood  antibacterial activities  antifungal activities  antimicrobial activities  Lasiodiplodia  ERWINIA-AMYLOVORA  VOLATILE COMPOUNDS  SEQUENCE DATA  IDENTIFICATION  VIRULENCE  INFECTION  ALLERGENS  
Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12, 页码: 824672
作者:  Wu, Hong;  Yang, Jun-Bo;  Liu, Jing-Xia;  Li, De-Zhu;  Ma, Peng-Fei
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Poales  phylogenomic conflict  plastome  mitochondrial  nuclear  EVOLUTIONARY SIGNIFICANCE  PLASTID GENOMES  NUCLEAR GENES  SEQUENCE DATA  TREE  MITOCHONDRIAL  DIVERSIFICATION  FAMILIES  RBCL  CLASSIFICATION  
Phylogenomics and the flowering plant tree of life 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022
作者:  Guo, Cen;  Luo, Yang;  Gao, Lian-Ming;  Yi, Ting-Shuang;  Li, Hong-Tao;  Yang, Jun-Bo;  Li, De-Zhu
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angiosperms  hybridization  incomplete lineage sorting  orthology inference  phylogenetic conflicts  reduced representation sequencing  whole-genome sequencing  whole-genome duplication  SYSTEMATIC-ERRORS  RNA-SEQ  SEQUENCE CAPTURE  SEED PLANTS  DATA SETS  GENOME  EVOLUTION  RADSEQ  TOOL  CLASSIFICATION  
Looking for the undiscovered asexual taxa: case studies from lesser studied life modes and habitats 期刊论文
MYCOSPHERE, 2021, 卷号: 12, 期号: 1, 页码: 1186-1229
作者:  Wijayawardene,N. N.;  Phillips,A. J. L.;  Tibpromma,S.;  Dai,D. Q.;  Selbmann,L.;  Monteiro,J. S.;  Aptroot,A.;  Flakus,A.;  Rajeshkumar,K. C.;  Coleine,C.;  Pereira,D. C.;  Fan,X.;  Zhang,L.;  Maharachchikumbura,S. S. N.;  Souza,M. F.;  Kukwa,M.;  Suwannarach,N.;  Rodriguez-Flakus,P.;  Ashtekar,N.;  Dauner,L.;  Tang,L. Z.;  Jin,X. C.;  Karunarathna,S. C.
收藏  |  浏览/下载：214/0  |  提交时间：2022/04/02
7 new taxa    Ascomycota    DNA sequences    fungal diversity  habitat  life modes  phylogeny    taxonomy  ROCK-INHABITING FUNGI  LICHENICOLOUS FUNGI  SP-NOV  ENDOPHYTIC FUNGI  BLACK FUNGI  PYRENOCARPOUS LICHENS  PHYLOGENETIC ANALYSIS  INCERTAE SEDIS  SEQUENCE DATA  SP. NOV.  
Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi 期刊论文
FUNGAL DIVERSITY, 2021, 卷号: 108, 期号: 1, 页码: 1-215
作者:  Tennakoon,Danushka S.;  Kuo,Chang-Hsin;  Maharachchikumbura,Sajeewa S. N.;  Thambugala,Kasun M.;  Gentekaki,Eleni;  Phillips,Alan J. L.;  Bhat,D. Jayarama;  Wanasinghe,Dhanushka N.;  de Silva,Nimali I.;  Promputtha,Itthayakorn;  Hyde,Kevin D.
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46 new taxa  Ascomycota  Dothideomycetes  Incertae sedis  Multi-gene phylogeny  Taxonomy  Sordariomycetes  PUI NATIONAL-PARK  SP.-NOV.  MOLECULAR PHYLOGENY  MULTIGENE PHYLOGENY  FUNGAL SUCCESSION  ENDOPHYTIC FUNGUS  SAPROBIC FUNGI  ALLIED GENERA  SEQUENCE DATA  RAIN-FOREST  
Integrative approaches for species delimitation in Ascomycota 期刊论文
FUNGAL DIVERSITY, 2021, 卷号: 109, 期号: 1, 页码: 155-179
作者:  Maharachchikumbura,Sajeewa S. N.;  Chen,Yanpeng;  Ariyawansa,Hiran A.;  Hyde,Kevin D.;  Haelewaters,Danny;  Perera,Rekhani H.;  Samarakoon,Milan C.;  Wanasinghe,Dhanushka N.;  Bustamante,Danilo E.;  Liu,Jian-Kui;  Lawrence,Daniel P.;  Cheewangkoon,Ratchadawan;  Stadler,Marc
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Ascomycetes  Phylogenetics  Species concept  Systematics  DNA-SEQUENCE DATA  FUSARIUM-SOLANI  MUSCODOR-ALBUS  FUNGAL ENDOPHYTES  DIVERGENCE TIMES  TREE ESTIMATION  EVOLUTION  GENUS  NAMES  PHYLOGENY  
Morpho-molecular taxonomic studies reveal a high number of endophytic fungi from Magnolia candolli and M. garrettii in China and Thailand 期刊论文
MYCOSPHERE, 2021, 卷号: 12, 期号: 1, 页码: 163-237
作者:  de Silva,N.,I;  Maharachchikumbura,S. S. N.;  Thambugala,K. M.;  Bhat,D. J.;  Karunarathna,S. C.;  Tennakoon,D. S.;  Phookamsak,R.;  Jayawardena,R. S.;  Lumyong,S.;  Hyde,K. D.
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