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Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies 期刊论文
PLANT COMMUNICATIONS, 2023, 卷号: 4, 期号: 1, 页码: 100427
作者:  Yin,Xin;  Yang,Danni;  Zhao,Youjie;  Yang,Xingyu;  Zhou,Zhili;  Sun,Xudong;  Kong,Xiangxiang;  Li,Xiong;  Wang,Guangyan;  Duan,Yuanwen;  Yang,Yunqiang;  Yang,Yongping
浏览  |  Adobe PDF(3529Kb)  |  收藏  |  浏览/下载：87/12  |  提交时间：2024/07/17
turnip genome  comparative genomics  pseudogene evolution  GSL biosynthesis  flavor  Brassicaceae lineage -specific polyploidization events (whole  WHOLE-GENOME TRIPLICATION  PHYLOGENETIC ANALYSIS  GLUCOSINOLATE CONTENT  ARABIDOPSIS  IDENTIFICATION  OLERACEA  EXPRESSION  SEQUENCE  ORIGIN  DIVERSIFICATION  
Editorial: Rise to the challenges in plastome phylogenomics 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1200302
作者:  Dong,Wenpan;  Gao,Lianming;  Xu,Chao;  Song,Yu;  Poczai,Peter
浏览  |  Adobe PDF(272Kb)  |  收藏  |  浏览/下载：64/13  |  提交时间：2024/05/09
plastome phylogenomics  incomplete lineage sorting  introgression  species tree  phylogenetic discordance  
Multi-locus phylogeny of Bryoria reveals recent diversification and unexpected diversity in section Divaricatae 期刊论文
LICHENOLOGIST, 2023
作者:  Myllys,Leena;  Pino-Bodas,Raquel;  Velmala,Saara;  Wang,Li-Song;  Goward,Trevor
浏览  |  Adobe PDF(1657Kb)  |  收藏  |  浏览/下载：27/4  |  提交时间：2024/07/30
fungal barcode  incomplete lineage sorting  ITS regions  lichen  species delimitation  SPECIES DELIMITATION  PCR PRIMERS  PARMELIACEAE  ASCOMYCOTA  DNA  EVOLUTION  TAXONOMY  LICHENS  USNEA  LECANORALES  
Phylogeny and evolution of Asparagaceae subfamily Nolinoideae: new insights from plastid phylogenomics 期刊论文
ANNALS OF BOTANY, 2022
作者:  Ji, Yunheng;  Landis, Jacob B.;  Yang, Jin;  Wang, Shuying;  Zhou, Nian;  Luo, Yan;  Liu, Haiyang
浏览  |  Adobe PDF(1191Kb)  |  收藏  |  浏览/下载：70/8  |  提交时间：2024/04/30
Ancient hybridization  Convallarieae  incomplete lineage sorting  plastome  phylogeny  Polygonateae  Theropogon  RUSCACEAE SENSU-LATO  CHROMOSOME EVOLUTION  DIVERSIFICATION  FAMILIES  GENES  CLASSIFICATION  COMBINATIONS  ANGIOSPERMS  RESOLVES  PLATFORM  
Phylogenomics and the flowering plant tree of life 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022
作者:  Guo, Cen;  Luo, Yang;  Gao, Lian-Ming;  Yi, Ting-Shuang;  Li, Hong-Tao;  Yang, Jun-Bo;  Li, De-Zhu
浏览  |  Adobe PDF(1181Kb)  |  收藏  |  浏览/下载：154/17  |  提交时间：2024/08/21
angiosperms  hybridization  incomplete lineage sorting  orthology inference  phylogenetic conflicts  reduced representation sequencing  whole-genome sequencing  whole-genome duplication  SYSTEMATIC-ERRORS  RNA-SEQ  SEQUENCE CAPTURE  SEED PLANTS  DATA SETS  GENOME  EVOLUTION  RADSEQ  TOOL  CLASSIFICATION  
Transcriptomes of Saussurea (Asteraceae) Provide Insights into High-Altitude Adaptation 期刊论文
PLANTS-BASEL, 2021, 卷号: 10, 期号: 8, 页码: 1715
作者:  Zhang,Xu;  Sun,Yanxia;  Landis,Jacob B.;  Shen,Jun;  Zhang,Huajie;  Kuang,Tianhui;  Sun,Wenguang;  Sun,Jiao;  Tiamiyu,Bashir B.;  Deng,Tao;  Sun,Hang;  Wang,Hengchang
浏览  |  Adobe PDF(1683Kb)  |  收藏  |  浏览/下载：120/14  |  提交时间：2022/04/02
high-altitude adaptation  Saussurea  transcriptomes  positive selection  extreme environments  lineage-specific genes  RNA-SEQ  HENGDUAN MOUNTAINS  STRESS ACCLIMATION  SEQUENCE ALIGNMENT  HIGH ELEVATIONS  METABOLISM  GENOME  ANNOTATION  EVOLUTION  SELECTION  
Molecular phylogeny, biogeography and character evolution of the montane genus Incarvillea Juss. (Bignoniaceae) 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 1, 页码: 1-14
作者:  Rana,Santosh Kumar;  Luo,Dong;  Rana,Hum Kala;  Chen,Shaotian;  Sun,Hang
浏览  |  Adobe PDF(5941Kb)  |  收藏  |  浏览/下载：192/22  |  提交时间：2022/04/02
Biodiversity hotspots  Biogeography  Incarvillea  Molecular phylogeny  Phytools  Stochastic character mapping  HENGDUAN MOUNTAINS  PLANT DIVERSITY  EASTERN ASIA  MODEL  MIOCENE  CONSERVATION  DISPERSAL  INFERENCE  PLATEAU  LINEAGE  
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 2, 页码: 341-351
作者:  Jin,Gui-Hua;  Zhou,Yan-Li;  Yang,Hong;  Hu,Yan-Ting;  Shi,Yong;  Li,Ling;  Siddique,Abu N.;  Liu,Chang-Ning;  Zhu,An-Dan;  Zhang,Cheng-Jun;  Li,De-Zhu
收藏  |  浏览/下载：119/0  |  提交时间：2022/04/02
comparative genomics  origin  orphan gene  transposable element  LINEAGE-SPECIFIC GENES  EVOLUTION  ORIGIN  IDENTIFICATION  EMERGENCE  PROTEIN  DUPLICATION  ALIGNMENT  SETS  
Using nuclear loci and allelic variation to disentangle the phylogeny of Phyllostachys (Poaceae, Bambusoideae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 卷号: 137, 页码: 222-235
作者:  Zhang, Li-Na;  Ma, Peng-Fei;  Zhang, Yu-Xiao;  Zeng, Chun-Xia;  Zhao, Lei;  Li, De-Zhu
浏览  |  Adobe PDF(3915Kb)  |  收藏  |  浏览/下载：263/63  |  提交时间：2019/07/29
Alleles  Bamboo  Hybridization  Incomplete lineage sorting  Monophyly  Phylogenetic inference  
Leaf epidermal character variation and evolution in Gaultherieae (Ericaceae) 期刊论文
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2015, 卷号: 178, 期号: 4, 页码: 686-710
作者:  Wang, Yin-Huan;  Lu, Lu;  Fritsch, Peter W.;  Wang, Hong;  Wang, Yue-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(1937Kb)  |  收藏  |  浏览/下载：343/69  |  提交时间：2015/12/17
Fitch Parsimony  Hierarchical Bayesian Inference  Leaf Indumentum  Leaf Adaptation  Lineage Delimitation