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Deep reticulation: the long legacy of hybridization in vascular plant evolution 期刊论文
PLANT JOURNAL, 2023, 卷号: 114, 期号: 4, 页码: 743-766
作者:  Stull,Gregory W.;  Pham,Kasey K.;  Soltis,Pamela S.;  Soltis,Douglas E.
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ancient hybridization  gene flow  phylogenomics  polyploidy  reticulation  vascular plants  CHLOROPLAST DNA  GENE FLOW  HYBRID SPECIATION  ANGIOSPERM DIVERSIFICATION  NATURAL HYBRIDIZATION  PHYLOGENETIC ANALYSES  SEED PLANTS  WHITE OAKS  SCALE DATA  POLYPLOIDY  
Phylotranscriptomic analyses reveal deep gene tree discordance in Camellia (Theaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2023, 卷号: 188, 页码: 107912
作者:  Zhang,Qiong;  Folk,Ryan A.;  Mo,Zhi-Qiong;  Ye,Hang;  Zhang,Zhao-Yuan;  Peng,Hua;  Zhao,Jian-Li;  Yang,Shi-Xiong;  Yu,Xiang-Qin
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Camellia  Gene tree discordance  Transcriptome  Rapid diversification  Selective pressure  RNA-SEQ DATA  PHYLOGENETIC ANALYSIS  NUCLEAR GENES  SEQUENCE  EVOLUTION  RESOLUTION  HISTORY  INFERENCE  ALGORITHM  SELECTION  
Selection and Validation of Reference Genes for Quantitative Real-Time PCR Analysis of Development and Tissue-Dependent Flower Color Formation in Cymbidium lowianum 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 2, 页码: 738
作者:  Dong, Xiu-Mei;  Zhang, Wei;  Zhang, Shi-Bao
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Cymbidium lowianum  flower organ development  reference gene selection and validation  qRT-PCR  transcriptome data  geNorm and Normfinder software  POLYMERASE-CHAIN-REACTION  EXPRESSION  NORMALIZATION  QUANTIFICATION  
Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1183-1197
作者:  Ye,Xia-Ying;  Ma,Peng-Fei;  Guo,Cen;  Li,De-Zhu
收藏  |  浏览/下载：141/0  |  提交时间：2022/04/02
plastome  ddRAD  Fargesia  phylogenetic incongruence  reticulate evolution  Yushania  CONFLICTING GENE TREES  BAMBOOS POACEAE  ARUNDINARIEAE POACEAE  PHYLOGENETIC-RELATIONSHIPS  MORPHOLOGICAL EVOLUTION  BALANCING SELECTION  THAMNOCALAMUS GROUP  ALLIES GRAMINEAE  RADSEQ DATA  GBSSI GENE  
Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi 期刊论文
FUNGAL DIVERSITY, 2021, 卷号: 108, 期号: 1, 页码: 1-215
作者:  Tennakoon,Danushka S.;  Kuo,Chang-Hsin;  Maharachchikumbura,Sajeewa S. N.;  Thambugala,Kasun M.;  Gentekaki,Eleni;  Phillips,Alan J. L.;  Bhat,D. Jayarama;  Wanasinghe,Dhanushka N.;  de Silva,Nimali I.;  Promputtha,Itthayakorn;  Hyde,Kevin D.
收藏  |  浏览/下载：391/0  |  提交时间：2022/04/02
46 new taxa  Ascomycota  Dothideomycetes  Incertae sedis  Multi-gene phylogeny  Taxonomy  Sordariomycetes  PUI NATIONAL-PARK  SP.-NOV.  MOLECULAR PHYLOGENY  MULTIGENE PHYLOGENY  FUNGAL SUCCESSION  ENDOPHYTIC FUNGUS  SAPROBIC FUNGI  ALLIED GENERA  SEQUENCE DATA  RAIN-FOREST  
Combined transcriptomic, proteomic and biochemical approaches to identify the cadmium hyper-tolerance mechanism of turnip seedling leaves 期刊论文
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2021, 卷号: 28, 期号: 18, 页码: 22458-22473
作者:  Li,Xiong;  Chen,Di;  Li,Boqun;  Yang,Ya;  Yang,Yongping
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Turnip  Cadmium  Hyperaccumulator  Flavonoid  Acetylation  RNA-SEQ DATA  GENOME-WIDE IDENTIFICATION  GLUTATHIONE METABOLISM  SULFUR ASSIMILATION  GENE FAMILIES  STRESS  EFFLUX  ZINC  ACCUMULATION  PROTEIN  
Differential expressions of anthocyanin synthesis genes underlie flower color divergence in a sympatric Rhododendron sanguineum complex 期刊论文
BMC PLANT BIOLOGY, 2021, 卷号: 21, 期号: 1, 页码: 204
作者:  Ye,Lin-Jiang;  Moller,Michael;  Luo,Ya-Huang;  Zou,Jia-Yun;  Zheng,Wei;  Wang,Yue-Hua;  Liu,Jie;  Zhu,An-Dan;  Hu,Jin-Yong;  Li,De-Zhu;  Gao,Lian-Ming
浏览  |  Adobe PDF(1937Kb)  |  收藏  |  浏览/下载：347/137  |  提交时间：2022/04/02
Anthocyanin synthesis  Comparative transcriptomics  Flower coloration  Gene expression  Rhododendron sanguineum complex  Sympatric speciation  RNA-SEQ DATA  TRANSCRIPTOME ANALYSIS  ANALYSIS REVEALS  BIOSYNTHESIS  GENERATION  ALIGNMENT  FLAVONOL  COPIGMENTATION  IDENTIFICATION  ACCUMULATION  
Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos 期刊论文
SYSTEMATIC BIOLOGY, 2021, 卷号: 70, 期号: 4, 页码: 756-773
作者:  Guo,Cen;  Ma,Peng-Fei;  Yang,Guo-Qian;  Ye,Xia-Ying;  Guo,Ying;  Liu,Jing-Xia;  Liu,Yun-Long;  Eaton,Deren A. R.;  Guo,Zhen-Hua;  Li,De-Zhu
收藏  |  浏览/下载：207/0  |  提交时间：2022/04/02
Arundinarieae  ddRAD  paleopolyploid  genome skimming  rapid diversification  incongruence  ARUNDINARIEAE POACEAE BAMBUSOIDEAE  SOUTH CHINA SEA  WOODY BAMBOOS  PHYLOGENOMIC ANALYSES  ADAPTIVE RADIATION  ECOLOGICAL OPPORTUNITY  PLANT DIVERSIFICATION  ASIAN MONSOON  RADSEQ DATA  GENE TREES  
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 卷号: 34, 期号: 2, 页码: 262-281
作者:  Xiang,Yezi;  Huang,Chien-Hsun;  Hu,Yi;  Wen,Jun;  Li,Shisheng;  Yi,Tingshuang;  Chen,Hongyi;  Xiang,Jun;  Ma,Hong
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Northeastern Washington-state  Sequence Data  Molecular Phylogenetics  British-columbia  Divergence Times  Prunus Rosaceae  Ribosomal Dna  Early Eocene  Gene Data  Polyploidy  Coalescence  Fruit Evolution  Molecular Clock  Nuclear Phylogeny  Rosaceae  Genome Duplication  
Transcriptome Sequences Resolve Deep Relationships of the Grape Family 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 9, 页码: e74394
作者:  Wen, Jun;  Xiong, Zhiqiang;  Nie, Ze-Long;  Mao, Likai;  Zhu, Yabing;  Kan, Xian-Zhao;  Ickert-Bond, Stefanie M.;  Gerrath, Jean;  Zimmer, Elizabeth A.;  Fang, Xiao-Dong
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Dispersal-vicariance Analysis  Nuclear Gene Data  Rna-seq Data  Phylogenetic Analysis  Molecular Phylogeny  Maximum-likelihood  Angiosperm Diversification  Parthenocissus Vitaceae  Seed Morphology  Evolution