| Transcriptome Sequences Resolve Deep Relationships of the Grape Family | |
| Wen, Jun1; Xiong, Zhiqiang2; Nie, Ze-Long3; Mao, Likai2; Zhu, Yabing2; Kan, Xian-Zhao4; Ickert-Bond, Stefanie M.5,6; Gerrath, Jean7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong2 | |
| 通讯作者 | Wen, J (reprint author), Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA.,wenj@si.edu ; fangxd@genomics.org.cn |
| 2013-09-17 | |
| 发表期刊 | PLOS ONE
 |
| ISSN | 1932-6203 |
| 卷号 | 8期号:9页码:e74394 |
| 摘要 | Previous phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated. |
| 关键词 | Dispersal-vicariance Analysis Nuclear Gene Data Rna-seq Data Phylogenetic Analysis Molecular Phylogeny Maximum-likelihood Angiosperm Diversification Parthenocissus Vitaceae Seed Morphology Evolution |
| 学科领域 | Multidisciplinary Sciences |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000324547300039 |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.kib.ac.cn/handle/151853/17304 |
| 专题 | 中国科学院东亚植物多样性与生物地理学重点实验室 |
| 作者单位 | 1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA 2.BGI Shenzhen, Shenzhen, Peoples R China 3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China 4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China 5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA 6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA 7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA |
| 推荐引用方式 GB/T 7714 | Wen, Jun,Xiong, Zhiqiang,Nie, Ze-Long,et al. Transcriptome Sequences Resolve Deep Relationships of the Grape Family[J]. PLOS ONE,2013,8(9):e74394. |
| APA | Wen, Jun.,Xiong, Zhiqiang.,Nie, Ze-Long.,Mao, Likai.,Zhu, Yabing.,...&Fang, Xiao-Dong.(2013).Transcriptome Sequences Resolve Deep Relationships of the Grape Family.PLOS ONE,8(9),e74394. |
| MLA | Wen, Jun,et al."Transcriptome Sequences Resolve Deep Relationships of the Grape Family".PLOS ONE 8.9(2013):e74394. |
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| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Wen-2013-Transcripto（1196KB） | 开放获取 | CC BY-NC-SA | 浏览 下载 | |||
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