Transcriptome Sequences Resolve Deep Relationships of the Grape Family
Wen, Jun1; Xiong, Zhiqiang2; Nie, Ze-Long3; Mao, Likai2; Zhu, Yabing2; Kan, Xian-Zhao4; Ickert-Bond, Stefanie M.5,6; Gerrath, Jean7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong2
2013-09-17
发表期刊PLOS ONE
ISSN1932-6203
卷号8期号:9页码:e74394
摘要Previous phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated.
关键词Dispersal-vicariance Analysis Nuclear Gene Data Rna-seq Data Phylogenetic Analysis Molecular Phylogeny Maximum-likelihood Angiosperm Diversification Parthenocissus Vitaceae Seed Morphology Evolution
资助信息Office of the Smithsonian Undersecretary of Science; US National Science Foundation [DEB 0743474, DEB 0743499]; National Museum of Natural History of the Smithsonian Institution; trust funds
学科领域Multidisciplinary Sciences
收录类别SCI
语种英语
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000324547300039
引用统计
被引频次:50[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.kib.ac.cn/handle/151853/17304
专题中国科学院东亚植物多样性与生物地理学重点实验室
作者单位1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA
2.BGI Shenzhen, Shenzhen, Peoples R China
3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China
4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China
5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA
6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA
7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA
推荐引用方式
GB/T 7714
Wen, Jun,Xiong, Zhiqiang,Nie, Ze-Long,et al. Transcriptome Sequences Resolve Deep Relationships of the Grape Family[J]. PLOS ONE,2013,8(9):e74394.
APA Wen, Jun.,Xiong, Zhiqiang.,Nie, Ze-Long.,Mao, Likai.,Zhu, Yabing.,...&Fang, Xiao-Dong.(2013).Transcriptome Sequences Resolve Deep Relationships of the Grape Family.PLOS ONE,8(9),e74394.
MLA Wen, Jun,et al."Transcriptome Sequences Resolve Deep Relationships of the Grape Family".PLOS ONE 8.9(2013):e74394.
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可
Wen-2013-Transcripto(1196KB) 开放获取CC BY-NC-SA请求全文
个性服务
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Wen, Jun]的文章
[Xiong, Zhiqiang]的文章
[Nie, Ze-Long]的文章
百度学术
百度学术中相似的文章
[Wen, Jun]的文章
[Xiong, Zhiqiang]的文章
[Nie, Ze-Long]的文章
必应学术
必应学术中相似的文章
[Wen, Jun]的文章
[Xiong, Zhiqiang]的文章
[Nie, Ze-Long]的文章
相关权益政策
暂无数据
收藏/分享
所有评论 (0)
暂无评论
 

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。