Transcriptome Sequences Resolve Deep Relationships of the Grape Family
Wen, Jun1; Xiong, Zhiqiang2; Nie, Ze-Long3; Mao, Likai2; Zhu, Yabing2; Kan, Xian-Zhao4; Ickert-Bond, Stefanie M.5,6; Gerrath, Jean7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong2
通讯作者Wen, J (reprint author), Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA.,wenj@si.edu ; fangxd@genomics.org.cn
2013-09-17
发表期刊PLOS ONE
ISSN1932-6203
卷号8期号:9页码:e74394
摘要Previous phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated.
关键词Dispersal-vicariance Analysis Nuclear Gene Data Rna-seq Data Phylogenetic Analysis Molecular Phylogeny Maximum-likelihood Angiosperm Diversification Parthenocissus Vitaceae Seed Morphology Evolution
学科领域Multidisciplinary Sciences
收录类别SCI
语种英语
WOS记录号WOS:000324547300039
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被引频次:85[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.kib.ac.cn/handle/151853/17304
专题中国科学院东亚植物多样性与生物地理学重点实验室
作者单位1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA
2.BGI Shenzhen, Shenzhen, Peoples R China
3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China
4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China
5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA
6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA
7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA
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Wen, Jun,Xiong, Zhiqiang,Nie, Ze-Long,et al. Transcriptome Sequences Resolve Deep Relationships of the Grape Family[J]. PLOS ONE,2013,8(9):e74394.
APA Wen, Jun.,Xiong, Zhiqiang.,Nie, Ze-Long.,Mao, Likai.,Zhu, Yabing.,...&Fang, Xiao-Dong.(2013).Transcriptome Sequences Resolve Deep Relationships of the Grape Family.PLOS ONE,8(9),e74394.
MLA Wen, Jun,et al."Transcriptome Sequences Resolve Deep Relationships of the Grape Family".PLOS ONE 8.9(2013):e74394.
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