Transcriptome Sequences Resolve Deep Relationships of the Grape Family
Wen, Jun1; Xiong, Zhiqiang2; Nie, Ze-Long3; Mao, Likai2; Zhu, Yabing2; Kan, Xian-Zhao4; Ickert-Bond, Stefanie M.5,6; Gerrath, Jean7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong2
Corresponding AuthorWen, J (reprint author), Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA.,wenj@si.edu ; fangxd@genomics.org.cn
2013-09-17
Source PublicationPLOS ONE
ISSN1932-6203
Volume8Issue:9Pages:e74394
AbstractPrevious phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated.
KeywordDispersal-vicariance Analysis Nuclear Gene Data Rna-seq Data Phylogenetic Analysis Molecular Phylogeny Maximum-likelihood Angiosperm Diversification Parthenocissus Vitaceae Seed Morphology Evolution
Subject AreaMultidisciplinary Sciences
Indexed BySCI
Language英语
WOS Research AreaScience & Technology - Other Topics
WOS SubjectMultidisciplinary Sciences
WOS IDWOS:000324547300039
Citation statistics
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/17304
Collection中国科学院东亚植物多样性与生物地理学重点实验室
Affiliation1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA
2.BGI Shenzhen, Shenzhen, Peoples R China
3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China
4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China
5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA
6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA
7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA
Recommended Citation
GB/T 7714
Wen, Jun,Xiong, Zhiqiang,Nie, Ze-Long,et al. Transcriptome Sequences Resolve Deep Relationships of the Grape Family[J]. PLOS ONE,2013,8(9):e74394.
APA Wen, Jun.,Xiong, Zhiqiang.,Nie, Ze-Long.,Mao, Likai.,Zhu, Yabing.,...&Fang, Xiao-Dong.(2013).Transcriptome Sequences Resolve Deep Relationships of the Grape Family.PLOS ONE,8(9),e74394.
MLA Wen, Jun,et al."Transcriptome Sequences Resolve Deep Relationships of the Grape Family".PLOS ONE 8.9(2013):e74394.
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