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题名: Transcriptome Sequences Resolve Deep Relationships of the Grape Family
作者: Wen, Jun1; Xiong, Zhiqiang2; null(聂泽龙)3; Mao, Likai2; Zhu, Yabing2; Kan, Xian-Zhao4; Ickert-Bond, Stefanie M.5, 6; Gerrath, Jean7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong2
刊名: PLOS ONE
关键词: DISPERSAL-VICARIANCE ANALYSIS ; NUCLEAR GENE DATA ; RNA-SEQ DATA ; PHYLOGENETIC ANALYSIS ; MOLECULAR PHYLOGENY ; MAXIMUM-LIKELIHOOD ; ANGIOSPERM DIVERSIFICATION ; PARTHENOCISSUS VITACEAE ; SEED MORPHOLOGY ; EVOLUTION
英文摘要: Previous phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated.
出版日期: 2013-09-17
卷号: 8, 期号:9, 页码:e74394
语种: 英语
收录类别: SCI
学科分类: Multidisciplinary Sciences
ISSN号: 1932-6203
Citation statistics:
内容类型: 期刊论文
URI标识: http://ir.kib.ac.cn/handle/151853/17304
Appears in Collections:中国科学院东亚植物多样性与生物地理学重点实验室_期刊论文

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作者单位: 1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA
2.BGI Shenzhen, Shenzhen, Peoples R China
3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China
4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China
5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA
6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA
7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA

Recommended Citation:
Wen, Jun;Xiong, Zhiqiang;Nie, Ze-Long;Mao, Likai;Zhu, Yabing;Kan, Xian-Zhao;Ickert-Bond, Stefanie M.;Gerrath, Jean;Zimmer, Elizabeth A.;Fang, Xiao-Dong.Transcriptome Sequences Resolve Deep Relationships of the Grape Family,PLOS ONE,2013,8(9):e74394
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