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Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1125107
作者:  Tyszka,Alexa S.;  Bretz,Eric C.;  Robertson,Holly M.;  Woodcock-Girard,Miles D.;  Ramanauskas,Karolis;  Larson,Drew A.;  Stull,Gregory W.;  Walker,Joseph F.
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phylogenetics  plastome  mitochondrial genome  chloroplast genome  phylogenomics  combinability  phylogenetic conflict  MITOCHONDRIAL GENOMES  PENALIZED LIKELIHOOD  NUCLEOTIDE-SEQUENCES  EXTANT GYMNOSPERMS  DYNAMIC EVOLUTION  CHLOROPLAST DNA  SEED PLANTS  GENE  RATES  RECOMBINATION  
Global consortium for the classification of fungi and fungus-like taxa 期刊论文
MYCOSPHERE, 2023, 卷号: 14, 期号: 1, 页码: 1960-2012
作者:  Hyde,K. D.;  Abdel-Wahab,M. A.;  Abdollahzadeh,J.;  Abeywickrama,P. D.;  Absalan,S.;  Afshari,N.;  Ainsworth,A. M.;  Akulov,O. Y.;  Aleoshin,V. V.;  Al-Sadi,A. M.;  Alvarado,P.;  Alves,A.;  Alves-Silva,G.;  Amalfi,M.;  Amira,Y.;  Amuhenage,T. B.;  Anderson,J. L.;  Antonin,V;  Aouali,S.;  Aptroot,A.;  Apurillo,C. C. S.;  Araujo,J. P. M.;  Ariyawansa,H. A.;  Armand,A.;  Arumugam,E.;  Asghari,R.;  Assis,D. M. A.;  Atienza,V;  Avasthi,S.;  Azevedo,E.;  Bahkali,A. H.;  Bakhshi,M.;  Banihashemi,Z.;  Bao,D. F.;  Baral,H. O.;  Barata,M.;  Barbosa,F. R.;  Barbosa,R. N.;  Barreto,R. W.;  Baschien,C.;  Belamesiatseva,D. B.;  Bennett Reuel,M.;  Bera,I;  Bezerra,J. D. P.;  Bezerra,J. L.;  Bhat,D. J.;  Bhunjun,C. S.;  Bianchinotti,M.,V;  Blaszkowski,J.;  Blondelle,A.;  Boekhout,T.;  Bonito,G.;  Boonmee,S.;  Boonyuen,N.;  Bregant,C.;  Buchanan,P.;  Bundhun,D.;  Burgaud,G.;  Burgess,T.;  Buyck,B.;  Cabarroi-Hernandez,M.;  Caceres,M. E. S.;  Caeiro,M. F.;  Cai,L.;  Cai,M. F.;  Calabon,M. S.;  Calaca,F. J. S.;  Callalli,M.;  Camara,M. P. S.;  Cano-Lira,J. F.;  Cantillo,T.;  Cao,B.;  Carlavilla,J. R.;  Carvalho,A.;  Castaneda-Ruiz,R. F.;  Castlebury,L.;  Castro-Jauregui,O.;  Catania,M. D.,V;  Cavalcanti,L. H.;  Cazabonne,J.;  Cedeno-Sanchez,M. L.;  Chaharmiri-Dokhaharani,S.;  Chaiwan,N.;  Chakraborty,N.;  Chaverri,P.;  Cheewangkoon,R.;  Chen,C.;  Chen,C. Y.;  Chen,K. H.;  Chen,J.;  Chen,Q.;  Chen,W. H.;  Chen,Y. P.;  Chethana,K. W. T.;  Coleine,C.;  Conde,T. O.;  Corazon-Guivin,M. A.;  Cortes-Perez,A.;  Costa-Rezende,D. H.;  Courtecuisse,R.;  Crouch,J. A.;  Crous,P. W.;  Cui,B. K.;  Cui,Y. Y.;  da Silva,D. K. A.;  da Silva,G. A.;  da Silva,I. R.;  da Silva,R. M. F.;  da Silva Santos,A. C.;  Dai,D. Q.;  Dai,Y. C.;  Damm,U.;  Darmostuk,V;  Zoha,Daroodi;  Das,K.;  Das,K.;  Davoodian,N.;  Davydov,E. A.;  Dayarathne,M. C.;  Decock,C.;  de Groot,M. D.;  De Kesel,A.;  dela Cruz,T. E. E.;  De Lange,R.;  Delgado,G.;  Denchev,C. M.;  Denchev,T. T.;  de Oliveira,N. T.;  de Silva,N.,I;  de Souza,F. A.;  Dentinger,B.;  Devadatha,B.;  Dianese,J. C.;  Dima,B.;  Diniz,A. G.;  Dissanayake,A. J.;  Dissanayake,L. S.;  Dogan,H. H.;  Doilom,M.;  Dolatabadi,S.;  Dong,W.;  Dong,Z. Y.;  Dos Santos,L. A.;  Drechsler-Santos,E. R.;  Du,T. Y.;  Dubey,M. K.;  Dutta,A. K.;  Egidi,E.;  Elliott,T. F.;  Elshahed,M. S.;  Erdogdu,M.;  Ertz,D.;  Etayo,J.;  Evans,H. C.;  Fan,X. L.;  Fan,Y. G.;  Fedosova,A. G.;  Fell,J.;  Fernandes,I;  Firmino,A. L.;  Fiuza,P. O.;  Flakus,A.;  Fragoso de Souza,C. A.;  Frisvad,J. C.;  Fryar,S. C.;  Gabaldon,T.;  Gajanayake,A. J.;  Galindo,L. J.;  Gannibal,P. B.;  Garcia,D.;  Garcia-Sandoval,S. R.;  Garrido-Benavent,I;  Garzoli,L.;  Gautam,A. K.;  Ge,Z-W;  Gene,D. J.;  Gentekaki,E.;  Ghobad-Nejhad,M.;  Giachini,A. J.;  Gibertoni,T. B.;  Goes-Neto,A.;  Gomdola,D.;  Gomes de Farias,A. R.;  Gorjon,S. P.;  Goto,B. T.;  Granados-Montero,M. M.;  Griffith,G. W.;  Groenewald,J. Z.;  Groenewald,M.;  Grossart,H. P.;  Gueidan,C.;  Gunarathne,A.;  Gunaseelan,S.;  Gusmao,L. F. P.;  Gutierrez,A. C.;  Guzman-Davalos,L.;  Haelewaters,D.;  Halling,R.;  Han,Y. F.;  Hapuarachchi,K. K.;  Harder,C. B.;  Harrington,T. C.;  Hattori,T.;  He,M. Q.;  He,S.;  He,S. H.;  Healy,R.;  Herandez-Restrepo,M.;  Heredia,G.;  Hodge,K. T.;  Holgado-Rojas,M.;  Hongsanan,S.;  Horak,E.;  Hosoya,T.;  Houbraken,J.;  Huang,S. K.;  Huanraluek,N.;  Hur,J. S.;  Hurdeal,V. G.;  Hustad,V. P.;  Iotti,M.;  Iturriaga,T.;  Jafar,E.;  Janik,P.;  Jany,J. L.;  Jayalal,R. G. U.;  Jayasiri,S. C.;  Jayawardena,R. S.;  Jeewon,R.;  Jeronimo,G. H.;  Jesus,A. L.;  Jin,J.;  Johnston,P. R.;  Jones,E. B. G.;  Joshi,Y.;  Justo,A.;  Kaishian,P.;  Kakishima,M.;  Kaliyaperumal,M.;  Kang,G. P.;  Kang,J. C.;  Karakehian,J. M.;  Karimi,O.;  Karpov,S. A.;  Karunarathna,S. C.;  Kaufmann,M.;  Kemler,M.;  Kezo,K.;  Khyaju,S.;  Kirchmair,M.;  Kirk,P. M.;  Kitaura,M. J.;  Klawonn,I;  Kolarik,M.;  Kong,A.;  Kuhar,F.;  Kukwa,M.;  Kumar,S.;  Kusan,I;  Lado,C.;  Larsson,K. H.;  Latha,K. P. D.;  Lee,H. B.;  Leonardi,M.;  Leontyev,D. L.;  Lestari,A. S.;  Li,C. J. Y.;  Li,D. W.;  Li,H.;  Li,H. Y.;  Li,L.;  Li,Q. R.;  Li,Q.;  Li,W. L.;  Li,Y.;  Li,Y. C.;  Li,Y. X.;  Liao,C. F.;  Liimatainen,K.;  Lim,Y. W.;  Lin,C. G.;  Linaldeddu,B. T.;  Linde,C. C.;  Linn,M. M.;  Liu,F.;  Liu,J. K.;  Liu,N. G.;  Liu,S.;  Liu,S. L.;  Liu,X. F.;  Liu,X. Y.;  Liu,X. Z.;  Liu,Z. B.;  Lu,L.;  Lu,Y. Z.;  Luangharn,T.;  Luangsa-ard,J. J.;  Lumbsch,H. T.;  Lumyong,S.;  Luo,L.;  Luo,M.;  Luo,Z. L.;  Ma,J.;  Machado,A. R.;  Madagammana,A. D.;  Madrid,H.;  Magurno,F.;  Magyar,D.;  Mahadevan,N.;  Maharachchikumbura,S. S. N.;  Maimaiti,Y.;  Malosso,E.;  Manamgoda,D. S.;  Manawasinghe,I. S.;  Mapook,A.;  Marasinghe,D. S.;  Mardones,M.;  Marin-Felix,Y.;  Marquez,R.;  Masigol,H.;  Matocec,N.;  May,T. W.;  McKenzie,E. H. C.;  Meiras-Ottoni,A.;  Melo,R. F. R.;  Mendes-Alvarenga,R. L.;  Mendieta,S.;  Meng,Q. F.;  Menkis,A.;  Menolli,N.,Jr.;  Mesic,A.;  Meza Calvo,J. G.;  Mikhailov,K.,V;  Miller,S. L.;  Moncada,B.;  Moncalvo,J. M.;  Monteiro,J. S.;  Monteiro,M.;  Mora-Montes,H. M.;  Moreau,P. A.;  Mueller,G. M.;  Mukhopadyay,S.;  Murugadoss,R.;  Nagy,L. G.;  Najafiniya,M.;  Nanayakkara,C. M.;  Nascimento,C. C.;  Nei,Y.;  Neves,M. A.;  Neuhauser,S.;  Niego,A. G. T.;  Nilsson,R. H.;  Niskanen,T.;  Niveiro,N.;  Noorabadi,M. T.;  Noordeloos,M. E.;  Norphanphoun,C.;  Nunez Otano,N. B.;  O'Donnell,R. P.;  Oehl,F.;  Olariaga,I;  Orlando,O. P.;  Pang,K. L.;  Papp,V;  Pawlowska,J.;  Peintner,U.;  Pem,D.;  Pereira,O. L.;  Perera,R. H.;  Perez-Moreno,J.;  Perez-Ortega,S.;  Peter,G.;  Phillips,A. J. L.;  Phonemany,M.;  Phukhamsakda,C.;  Phutthacharoen,K.;  Piepenbring,M.;  Pires-Zottarelli,C. L. A.;  Poinar,G.;  Posta,A.;  Prieto,M.;  Promputtha,I;  Quandt,C. A.;  Radek,R.;  Rahnama,K.;  Raj,K. N. A.;  Rajeshkumar,K. C.;  Rama,T.;  Rambold,G.;  Ramirez-Cruz,V;  Rasconi,S.;  Rathnayaka,A. R.;  Raza,M.;  Ren,G. C.;  Robledo,G. L.;  Rodriguez-Flakus,P.;  Ronikier,A.;  Rossi,W.;  Ryberg,M.;  Ryvarden,L. R.;  Salvador-Montoya,C. A.;  Samant,B.;  Samarakoon,B. C.;  Samarakoon,M. C.;  Sanchez-Castro,I;  Sanchez-Garcia,M.;  Sandoval-Denis,M.;  Santamaria,B.;  Santiago,A. L. C. M. A.;  Sarma,V. V.;  Savchenko,A.;  Savchenko,K.;  Saxena,R. K.;  Scholler,M.;  Schoutteten,N.;  Seifollahi,E.;  Selbmann,L.;  Selcuk,F.;  Senanayake,I. C.;  Seto,K.;  Shabashova,T. G.;  Shen,H. W.;  Shen,Y. M.;  Silva-Filho,A. G. S.;  Simmons,D. R.;  Singh,R.;  Sir,E. B.;  Song,C. G.;  Souza-Motta,C. M.;  Sruthi,O. P.;  Stadler,M.;  Stchigel,A. M.;  Stemler,J.;  Stephenson,S. L.;  Strassert,J. F. H.;  Su,H. L.;  Su,L.;  Suetrong,S.;  Sulistyo,B.;  Sun,Y. F.;  Sun,Y. R.;  Svantesson,S.;  Sysouphanthong,P.;  Takamatsu,S.;  Tan,T. H.;  Tanaka,K.;  Tang,A. M. C.;  Tang,X.;  Tanney,J. B.;  Tavakol,N. M.;  Taylor,J. E.;  Taylor,P. W. J.;  Tedersoo,L.;  Tennakoon,D. S.;  Thamodini,G. K.;  Thines,M.;  Thiyagaraja,V;  Thongklang,N.;  Tiago,P.,V;  Tian,Q.;  Tian,W. H.;  Tibell,L.;  Tibell,S.;  Tibpromma,S.;  Tkalcec,Z.;  Tomsovsky,M.;  Toome-Heller,M.;  Torruella,G.;  Tsurykau,A.;  Udayanga,D.;  Ulukapi,M.;  Untereiner,W. A.;  Uzunov,B. A.;  Valle,L. G.;  Van Caenegem,W.;  Van den Wyngaert,S.;  Van Vooren,N.;  Velez,P.;  Verma,R. K.;  Vieira,L. C.;  Vieira,W. A. S.;  Vizzini,A.;  Walker,A.;  Walker,A. K.;  Wanasinghe,D. N.;  Wang,C. G.;  Wang,K.;  Wang,S. X.;  Wang,X. Y.;  Wang,Y.;  Wannasawang,N.;  Wartchow,F.;  Wei,D. P.;  Wei,X. L.;  White,J. F.;  Wijayawardene,N. N.;  Wijesinghe,S. N.;  Wijesundara,D. S. A.;  Wisitrassameewong,K.;  Worthy,F. R.;  Wu,F.;  Wu,G.;  Wu,H. X.;  Wu,N.;  Wu,W. P.;  Wurzbacher,C.;  Xiao,Y. P.;  Xiong,Y. R.;  Xu,B.;  Xu,L. J.;  Xu,R.;  Xu,R. F.;  Xu,R. J.;  Xu,T. M.;  Yakovchenko,L.;  Yan,J. Y.;  Yang,H. D.;  Yang,J.;  Yang,Z. L.;  Yang,Y. H.;  Yapa,N.;  Yasanthika,E.;  Youssef,N. H.;  Yu,F. M.;  Yu,Q.;  Yu,X. D.;  Yu,Y. X.;  Yu,Z. F.;  Yuan,H. S.;  Yuan,Y.;  Yurkov,A.;  Zafari,D.;  Zamora,J. C.;  Zare,R.;  Zeng,M.;  Zeng,N. K.;  Zeng,X. Y.;  Zhang,F.;  Zhang,H.;  Zhang,J. F.;  Zhang,J. Y.;  Zhang,Q. Y.;  Zhang,S. N.;  Zhang,W.;  Zhang,Y.;  Zhang,Y. X.;  Zhao,C. L.;  Zhao,H.;  Zhao,Q.;  Zhao,R. L.;  Zhou,L. W.;  Zhou,M.;  Zhurbenko,M. P.;  Zin,H. H.;  Zucconi,L.
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classification  nomenclature  scientific criticism  taxonomy  LEVEL PHYLOGENETIC CLASSIFICATION  INCORPORATING ANAMORPHIC FUNGI  FATTY-ACID-COMPOSITION  DNA-SEQUENCE DATA  NATURAL CLASSIFICATION  LEAF-LITTER  SPECIES RECOGNITION  IDENTIFICATION  NOMENCLATURE  TREE  
Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota) 期刊论文
FUNGAL DIVERSITY, 2018, 卷号: 92, 期号: 1, 页码: 43-129
作者:  Wijayawardene, Nalin N.;  Pawlowska, Julia;  Letcher, Peter M.;  Kirk, Paul M.;  Humber, Richard A.;  Schuessler, Arthur;  Wrzosek, Marta;  Muszewska, Anna;  Okrasinska, Alicja;  Istel, Lukasz;  Gesiorska, Aleksandra;  Mungai, Paul;  Lateef, Adebola Azeez;  Rajeshkumar, Kunhiraman C.;  Singh, Rajshree V.;  Radek, Renate;  Walther, Grit;  Wagner, Lysett;  Walker, Christopher;  Wijesundara, D. Siril A.;  Papizadeh, Moslem;  Dolatabadi, Somayeh;  Shenoy, Belle D.;  Tokarev, Yuri S.;  Lumyong, Saisamorn;  Hyde, Kevin D.
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Invalid Genera  Nephridiophagaceae Fam. Nov  Outline  Phylogeny  Validation  
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi 期刊论文
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2014, 页码: bau061
作者:  Schoch, Conrad L.;  Robbertse, Barbara;  Robert, Vincent;  Duong Vu;  Cardinali, Gianluigi;  Irinyi, Laszlo;  Meyer, Wieland;  Nilsson, R. Henrik;  Hughes, Karen;  Miller, Andrew N.;  Kirk, Paul M.;  Abarenkov, Kessy;  Aime, M. Catherine;  Ariyawansa, Hiran A.;  Bidartondo, Martin;  Boekhout, Teun;  Buyck, Bart;  Cai, Qing;  Chen, Jie;  Crespo, Ana;  Crous, Pedro W.;  Damm, Ulrike;  De Beer, Z. Wilhelm;  Dentinger, Bryn T. M.;  Divakar, Pradeep K.;  Duenas, Margarita;  Feau, Nicolas;  Fliegerova, Katerina;  Garcia, Miguel A.;  Ge, Zai-Wei;  Griffith, GarethW.;  Groenewald, Johannes Z.;  Groenewald, Marizeth;  Grube, Martin;  Gryzenhout, Marieka;  Gueidan, Cecile;  Guo, Liangdong;  Hambleton, Sarah;  Hamelin, Richard;  Hansen, Karen;  Hofstetter, Valerie;  Hong, Seung-Beom;  Houbraken, Jos;  Hyde, Kevin D.;  Inderbitzin, Patrik;  Johnston, Peter R.;  Karunarathna, Samantha C.;  Koljalg, Urmas;  Kovacs, Gabor M.;  Kraichak, Ekaphan;  Krizsan, Krisztina;  Kurtzman, Cletus P.;  Larsson, Karl-Henrik;  Leavitt, Steven;  Letcher, Peter M.;  Liimatainen, Kare;  Liu, Jian-Kui;  Lodge, D. Jean;  Luangsa-ard, Janet Jennifer;  Lumbsch, H. Thorsten;  Maharachchikumbura, Sajeewa S. N.;  Manamgoda, Dimuthu;  Martin, Maria P.;  Minnis, Andrew M.;  Moncalvo, Jean-Marc;  Mule, Giuseppina;  Nakasone, Karen K.;  Niskanen, Tuula;  Olariaga, Ibai;  Papp, Tamas;  Petkovits, Tamas;  Pino-Bodas, Raquel;  Powell, Martha J.;  Raja, Huzefa A.;  Redecker, Dirk;  Sarmiento-Ramirez, J. M.;  Seifert, Keith A.;  Shrestha, Bhushan;  Stenroos, Soili;  Stielow, Benjamin;  Suh, Sung-Oui;  Tanaka, Kazuaki;  Tedersoo, Leho;  Teresa Telleria, M.;  Udayanga, Dhanushka;  Untereiner, Wendy A.;  Dieguez Uribeondo, Javier;  Subbarao, Krishna V.;  Vagvoelgyi, Csaba;  Visagie, Cobus;  Voigt, Kerstin;  Walker, Donald M.;  Weir, Bevan S.;  Weiss, Michael;  Wijayawardene, Nalin N.;  Wingfield, Michael J.;  Xu, J. P.;  Yang, Zhu L.;  Zhang, Ning;  Zhuang, Wen-Ying;  Federhen, Scott;  Yang, YP (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Div & Biogeog East Asia, Menglun Township 650201, Yunnan, Peoples R China.;  yangyp@mail.kib.ac.cn
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Internal Transcribed Spacer  Arbuscular Mycorrhizal Fungi  Ribosomal Dna  Interspecific Hybridization  Sequence Analyses  Species Complex  Identification  Evolution  Barcode  Life  
Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431 期刊论文
BMC GENOMICS, 2014, 卷号: 15, 期号: 1
作者:  Yang, Yanfang;  Zhao, Hainan;  Barrero, Roberto A.;  Zhang, Baohong;  Sun, Guiling;  Wilson, Iain W.;  Xie, Fuliang;  Walker, Kevin D.;  Parks, Joshua W.;  Bruce, Robert;  Guo, Guangwu;  Chen, Li;  Zhang, Yong;  Huang, Xin;  Tang, Qi;  Liu, Hongwei;  Bellgard, Matthew I.;  Qiu, Deyou;  Lai, Jinsheng;  Hoffman, Angela
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Penicillium Aurantiogriseum Nrrl 62431  Paclitaxel  Taxol (Tm)  Endophytic Fungi  Genome Sequence  Horizontal Gene Transfer  
The Global Impact of Scaling Up HIV/AIDS Prevention Programs in Low- and Middle-Income Countries 期刊论文
Science, 2006, 卷号: 311, 页码: 1474-1476
作者:  John Stover;  Stefano Bertozzi;  Juan-Pablo Gutierrez;  Neff Walker;  Karen A. Stanecki;  Robert Greener;  Eleanor Gouws;  Catherine Hankins;  Geoff P. Garnett;  Joshua A. Salomon;  J. Ties Boerma;  Paul De Lay;  Peter D. Ghys
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The Global Impact of Scaling UpHIV/AIDS Prevention Programs inLow- and Middle-Income Countries 期刊论文
Science, 2006, 卷号: 311, 页码: 1474-1476
作者:  John Stover;  Stefano Bertozzi;  Juan-Pablo Gutierrez;  Neff Walker;  Karen A. Stanecki;  Robert Greener;  Eleanor Gouws;  Catherine Hankins;  Geoff P. Garnett;  Joshua A. Salomon;  J. Ties Boerma;  Paul De Lay;  Peter D. Ghys
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Loess Ecosystems of Northern Alaska: Regional Gradient and Toposequence at Prudhoe Bay 期刊论文
Ecological Monographs, 1991, 卷号: 61, 期号: 4, 页码: 437-464
作者:  D. A. Walker;  K. R. Everett
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Chlorophyll Fluorescence as a Measure of Photosynthetic Carbon Assimilation 期刊论文
Proceedings: Biological Sciences, 1990, 卷号: 242, 期号: 1303, 页码: 29-35
作者:  G. G. R. Seaton;  D. A. Walker
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Automated Measurement of Leaf Photosynthetic O2 Evolution as a Function of Photon Flux Density [and Discussion] 期刊论文
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 1989, 卷号: 323, 期号: 1216, 页码: 313-326
作者:  D. A. Walker;  P. G. Jarvis;  G. D. Farquhar;  J. Leverenz
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