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Time to update the sectional classification of Ilex (Aquifoliaceae): New insights from Ilex phylogeny, morphology, and distribution 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
Authors:  Yang,Yi;  Jiang,Lei;  Liu,En-De;  Liu,Wei-Li;  Chen,Li;  Kou,Yi-Xuan;  Fan,Deng-Mei;  Cheng,Shan-Mei;  Zhang,Zhi-Yong;  Peng,Hua
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classification system  distribution  Ilex L  morphology  nuclear gene  phylogeny  GLUTAMINE-SYNTHETASE NCPGS  HISTORY  GENES  
Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change 期刊论文
MOLECULAR ECOLOGY, 2023, 卷号: 32, 期号: 11, 页码: 2850-2868
Authors:  Qin,Sheng-Yuan;  Zuo,Zheng-Yu;  Guo,Cen;  Du,Xin-Yu;  Liu,Shui-Yin;  Yu,Xiang-Qin;  Xiang,Xiao-Guo;  Rong,Jun;  Liu,Bing;  Liu,Zhi-Fang;  Ma,Peng-Fei;  Li,De-Zhu
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East Asian monsoon  evergreen broadleaved forests  genome resequencing  Lauraceae  Litsea complex  single-nucleotide variants  SOUTHERN CHINA EVIDENCE  NORTHERN-HEMISPHERE  MOLECULAR PHYLOGENY  SPECIES RICHNESS  LITSEA COMPLEX  R PACKAGE  LAURACEAE  EOCENE  TERTIARY  BIOGEOGRAPHY  
Continuous genetic adaptation to high elevations of alpine bamboos in the Hengduan Mountains, Southwest China 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
Authors:  Luo,Li-Ying;  Jin,Gui-Hua;  Ma,Peng-Fei;  Li,De-Zhu
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alpine bamboos  continuum evolution  Hengduan Mountains  high-elevation adaptation  transcriptome  HIGH-ALTITUDE ADAPTATION  PHYLOGENETIC ANALYSIS  EVOLUTION  DUPLICATIONS  GENERATION  POLYPLOIDY  SELECTION  
Fungal diversity notes 1611-1716: taxonomic and phylogenetic contributions on fungal genera and species emphasis in south China 期刊论文
FUNGAL DIVERSITY, 2023
Authors:  Senanayake,Indunil C.;  Rossi,Walter;  Leonardi,Marco;  Weir,Alex;  McHugh,Mark;  Rajeshkumar,Kunhiraman C.;  Verma,Rajnish K.;  Karunarathna,Samantha C.;  Tibpromma,Saowaluck;  Ashtekar,Nikhil;  Ashtamoorthy,Sreejith K.;  Raveendran,Sanjay;  Kour,Gurmeet;  Singh,Aishwarya;  De la Pena-Lastra,Saul;  Mateos,Antonio;  Kolarik,Miroslav;  Antonin,Vladimir;  Sevcikova,Hana;  Esteve-Raventos,Fernando;  Larsson,Ellen;  Pancorbo,Fermin;  Moreno,Gabriel;  Altes,Alberto;  Turegano,Yolanda;  Du,Tian-Ye;  Lu,Li;  Li,Qi-Rui;  Kang,Ji-Chuan;  Gunaseelan,Sugantha;  Kezo,Kezhocuyi;  Kaliyaperumal,Malarvizhi;  Fu,Jizhen;  Samarakoon,Milan C.;  Gafforov,Yusufjon;  Teshaboeva,Shakhnoza;  Kunjan,Pradeep C.;  Chamaparambath,Arya;  Flakus,Adam;  Etayo,Javier;  Rodriguez-Flakus,Pamela;  Zhurbenko,Mikhail P.;  de Silva,Nimali I.;  Tennakoon,Danushka S.;  Latha,K. P. Deepna;  Manimohan,Patinjareveettil;  Raj,K. N. Anil;  Calabon,Mark S.;  Ahmadpour,Abdollah;  Heidarian,Zeinab;  Alavi,Zahra;  Alavi,Fatemeh;  Ghosta,Youbert;  Azizi,Razmig;  Luo,Mei;  Zhao,Min-Ping;  Kularathnage,Nuwan D.;  Hua,Li;  Yang,Yun-Hui;  Liao,Chun-Fang;  Zhao,Hai-Jun;  Lestari,Anis S.;  Jayasiri,Subashini C.;  Yu,Feng-Ming;  Lei,Lei;  Liu,Jian-Wei;  Karimi,Omid;  Tang,Song-Ming;  Sun,Ya-Ru;  Wang,Yong;  Zeng,Ming;  Htet,Zin H.;  Linaldeddu,Benedetto T.;  Alves,Artur;  Phillips,Alan J. L.;  Bregant,Carlo;  Montecchio,Lucio;  De Kesel,Andre;  Hustad,Vincent P.;  Miller,Andrew N.;  Fedosova,Anna G.;  Kucera,Viktor;  Raza,Mubashar;  Hussain,Muzammil;  Chen,Yan-Peng;  Thiyagaraja,Vinodhini;  Gomdola,Deecksha;  Rathnayaka,Achala R.;  Dissanayake,Asha J.;  Suwannarach,Nakarin;  Hongsanan,Sinang;  Maharachchikumbura,Sajeewa S. N.;  Dissanayake,Lakmali S.;  Wijayawardene,Nalin N.;  Phookamsak,Rungtiwa;  Lumyong,Saisamorn;  Jones,E. B. Gareth;  Yapa,Neelamanie;  Wanasinghe,Dhanushka N.;  Xie,Ning;  Doilom,Mingkwan;  Manawasinghe,Ishara S.;  Liu,Jian-Kui (Jack);  Zhao,Qi;  Xu,Biao;  Hyde,Kevin D.;  Song,Jiage
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Agaricomycetes  Ascomycota  Basidiomycota  Dothideomycetes  Eurotiomycetes  Fungal diversity  Geoglossomycetes  Geographical distribution  Host records  Incertae sedis  Laboulbeniomycetes  Lecanoromycetes  Leotiomycetes  Novel taxa  New combination  Oomycota  Peronosporea  Pezizomycetes  Phylogeny  Sordariomycetes  South Chinese fungi  Taxonomy  MORPHO-MOLECULAR CHARACTERIZATION  FRESH-WATER FUNGI  SP. NOV.  LICHENICOLOUS FUNGI  1ST REPORT  GEN. NOV  NATURAL CLASSIFICATION  MULTIGENE PHYLOGENY  BIOLOGICAL-CONTROL  REFINED FAMILIES  
Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia 期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 147-155
Authors:  Lv,Shi-Yu;  Ye,Xia-Ying;  Li,Zhong-Hu;  Ma,Peng-Fei;  Li,De-Zhu
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Fargesia  Genome-skimming  DNA barcoding  Plastome  Ribosomal DNA  WHOLE CHLOROPLAST GENOMES  RNA-SEQ DATA  ARUNDINARIEAE POACEAE  BAMBUSOIDEAE  TEMPERATE  PLATFORM  
Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos 期刊论文
PLANTA, 2022, 卷号: 256, 期号: 3, 页码: 53
Authors:  Niu, Liang-Zhong;  Xu, Wei;  Ma, Peng-Fei;  Guo, Zhen-Hua;  Li, De-Zhu
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DNA methylation  Gene expression  Internode elongation  Jasmonic acid  Woody bamboos  PHENYLALANINE AMMONIA-LYASE  MOLECULAR CHARACTERIZATION  CYTOSINE METHYLTRANSFERASE  INTERNODE ELONGATION  TRANSCRIPTION FACTOR  H3 LYSINE-9  ARABIDOPSIS  EXPRESSION  DEMETHYLATION  PROTEIN  
Plastid phylogenomics shed light on intergeneric relationships and spatiotemporal evolutionary history of Melocanninae (Poaceae: Bambusoideae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 3, 页码: 640-652
Authors:  Zhou, Meng-Yuan;  Liu, Jing-Xia;  Ma, Peng-Fei;  Yang, Jun-Bo;  Li, De-Zhu
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The significance of recent diversification in the Northern Hemisphere in shaping the modern global flora revealed from the herbaceous tribe of Rubieae (Rubiaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 177, 页码: 107628
Authors:  Yang, Li-E;  Sun, Lu;  Peng, De-Li;  Chen, Guang-Jie;  Sun, Hang;  Nie, Ze-Long
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Genetic analysis of walnut cultivars from southwest China: Implications for germplasm improvement 期刊论文
PLANT DIVERSITY, 2022, 卷号: 44, 期号: 6, 页码: 530-541
Authors:  Wambulwa, Moses C.;  Fan, Peng-Zhen;  Milne, Richard;  Wu, Zeng-Yuan;  Luo, Ya-Huang;  Wang, Yue-Hua;  Wang, Hong;  Gao, Lian-Ming;  Xiahou, Zuo-Ying;  Jin, Ye-Chuan;  Ye, Lin-Jiang;  Xu, Zu-Chang;  Yang, Zhi-Chun;  Li, De-Zhu;  Liu, Jie
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Carex malipoensis (Cyperaceae), a new species from southeast Yunnan, China 期刊论文
PHYTOKEYS, 2022, 期号: 188, 页码: 19-29
Authors:  Li, Yuan-Yuan;  Chen, Ya-Ping;  Jiang, Li-Qiong;  Liu, En-De;  Luo, Yuan;  Peng, Hua
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