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Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1125107
作者:  Tyszka,Alexa S.;  Bretz,Eric C.;  Robertson,Holly M.;  Woodcock-Girard,Miles D.;  Ramanauskas,Karolis;  Larson,Drew A.;  Stull,Gregory W.;  Walker,Joseph F.
浏览  |  Adobe PDF(854Kb)  |  收藏  |  浏览/下载:29/7  |  提交时间:2024/05/09
phylogenetics  plastome  mitochondrial genome  chloroplast genome  phylogenomics  combinability  phylogenetic conflict  MITOCHONDRIAL GENOMES  PENALIZED LIKELIHOOD  NUCLEOTIDE-SEQUENCES  EXTANT GYMNOSPERMS  DYNAMIC EVOLUTION  CHLOROPLAST DNA  SEED PLANTS  GENE  RATES  RECOMBINATION  
Comparative analysis of the medicinal plant Polygonatum kingianum (Asparagaceae) with related verticillate leaf types of the Polygonatum species based on chloroplast genomes 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1202634
作者:  Shi,Naixing;  Yang,Zefen;  Miao,Ke;  Tang,Lilei;  Zhou,Nian;  Xie,Pingxuan;  Wen,Guosong
浏览  |  Adobe PDF(10455Kb)  |  收藏  |  浏览/下载:31/9  |  提交时间:2024/05/09
Polygonatum  verticillate leaf  Polygonatum kingianum  chloroplast genome  comparative analysis  phylogenetic analysis  CODON USAGE  GENUS POLYGONATUM  SOFTWARE  TRANSFERABILITY  MITOCHONDRIAL  MARKERS  MODEL  
First comparative analysis of complete chloroplast genomes among six Hedysarum (Fabaceae) species 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1211247
作者:  Juramurodov,Inom;  Makhmudjanov,Dilmurod;  Yusupov,Ziyoviddin;  Tojibaev,Komiljon
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Hedysarum  chloroplast genome  comparative analysis  phylogeny  protein-coding genes  MAXIMUM-LIKELIHOOD  GENE-EXPRESSION  TRNL-F  SEQUENCE  MATK  ORGANIZATION  SYSTEMATICS  PHYLOGENY  INTRON  NRDNA  
Progress, challenge and prospect of plant plastome annotation 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1166140
作者:  Qu,Xiao-Jian;  Zou,Dan;  Zhang,Rui-Yu;  Stull,Gregory W.;  Yi,Ting-Shuang
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annotation standards  chloroplast genome  plastome  protein structure  pseudogenes  RNA-editing genes  MITOCHONDRIAL GENES  RNA  GENOME  SEQUENCE  CHLOROPLASTS  TRANSLATION  
Comparative analyses of Linderniaceae plastomes, with implications for its phylogeny and evolution 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1265641
作者:  Yan,Rongrong;  Geng,Yanfei;  Jia,Yuhuan;  Xiang,Chunlei;  Zhou,Xinxin;  Hu,Guoxiong
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Lindernieae  Lindernia  Picria  Torenia  Scrophulariaceae  chloroplast genome  phylogenomics  SEQUENCE  PLACEMENT  SOFTWARE  TORENIA  DNA  DISINTEGRATION  MITOCHONDRIAL  ALIGNMENT  PLATFORM  GENOMES  
Comparative plastome genomics and phylogenetic relationships of the genus Trollius 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1293091
作者:  Li,Jiaxin;  Du,Yan;  Xie,Lei;  Jin,Xiaohua;  Zhang,Zhirong;  Yang,Meiqing
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Trollius  plastome  comparative analysis  divergent hotspots  phylogenetic relationships  COMPLETE CHLOROPLAST GENOME  SEQUENCE  RANUNCULACEAE  REPEATS  PLANT  DNA  
Does IR-loss promote plastome structural variation and sequence evolution? 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 13, 页码: 888049
作者:  Wang, Zi-Xun;  Wang, Ding-Jie;  Yi, Ting-Shuang
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plastid genome evolution  structural variation  inverted repeat region loss  substitution rate  comparative genomics  CHLOROPLAST GENOME SEQUENCE  INVERTED REPEAT  NUCLEOTIDE SUBSTITUTION  PHYLOGENETIC ANALYSIS  MOLECULAR EVOLUTION  NONCODING RNAS  RATES  REARRANGEMENTS  ORGANIZATION  CUPRESSOPHYTES  
Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 13, 页码: 832884
作者:  Song, Weicai;  Ji, Chuxuan;  Chen, Zimeng;  Cai, Haohong;  Wu, Xiaomeng;  Shi, Chao;  Wang, Shuo
浏览  |  Adobe PDF(7732Kb)  |  收藏  |  浏览/下载:3/2  |  提交时间:2024/08/21
Musa  chloroplast genome  genetic structure  comparative analysis  phylogenetic analysis  interspecific relationships  BANANA  SEQUENCE  GENES  DNA  WASTE  ANGIOSPERMS  ANNOTATION  EVOLUTION  REMOVAL  PLANTS  
Comparative chloroplast genome analyses of Paraboea (Gesneriaceae): Insights into adaptive evolution and phylogenetic analysis 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 13, 页码: 1019831
作者:  Wang, Yifei;  Wen, Fang;  Hong, Xin;  Li, Zhenglong;  Mi, Yaolei;  Zhao, Bo
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Paraboea  phylogenetic  positive selection  chloroplast  genome  MULTIPLE SEQUENCE ALIGNMENT  CYCLIC ELECTRON FLOW  MOLECULAR EVOLUTION  NADH-DEHYDROGENASE  POSITIVE SELECTION  GENES  PLASTOQUINONE  RESOURCES  COMPLEX  PLANTS  
Comparative Analyses of Chloroplast Genomes From 14 Zanthoxylum Species: Identification of Variable DNA Markers and Phylogenetic Relationships Within the Genus 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 11, 页码: 605793
作者:  Zhao,Kaihui;  Li,Lianqiang;  Quan,Hong;  Yang,Junbo;  Zhang,Zhirong;  Liao,Zhihua;  Lan,Xiaozhong
收藏  |  浏览/下载:70/0  |  提交时间:2022/04/02
Zanthoxylum  chloroplast genome  divergent hotspots  DNA barcode sequence  phylogeny  GENETIC DIVERSITY  SSR-MARKERS  SEQUENCE  ANNOTATION  PLATFORM  MATK  LOCI  WILD  PSBA