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Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin 期刊论文
PEERJ, 2023, 卷号: 11, 页码: e14573
作者:  Shi,Wenbo;  Song,Weicai;  Chen,Zimeng;  Cai,Haohong;  Gong,Qin;  Liu,Jin;  Shi,Chao;  Wang,Shuo
浏览  |  Adobe PDF(1788Kb)  |  收藏  |  浏览/下载：24/8  |  提交时间：2024/07/17
Phoebe  Chloroplast genome  Comparative analysis  Phylogeny  Phylogeographical origin  Conservation  POLYMORPHISM ANALYSIS  SEQUENCE  DNA  ANNOTATION  REGION  TOOLS  
Deep reticulation: the long legacy of hybridization in vascular plant evolution 期刊论文
PLANT JOURNAL, 2023, 卷号: 114, 期号: 4, 页码: 743-766
作者:  Stull,Gregory W.;  Pham,Kasey K.;  Soltis,Pamela S.;  Soltis,Douglas E.
浏览  |  Adobe PDF(1853Kb)  |  收藏  |  浏览/下载：13/5  |  提交时间：2024/07/10
ancient hybridization  gene flow  phylogenomics  polyploidy  reticulation  vascular plants  CHLOROPLAST DNA  GENE FLOW  HYBRID SPECIATION  ANGIOSPERM DIVERSIFICATION  NATURAL HYBRIDIZATION  PHYLOGENETIC ANALYSES  SEED PLANTS  WHITE OAKS  SCALE DATA  POLYPLOIDY  
Home at last: Molecular phylogenetic analyses support subsuming Metastachydium within Phlomoides (Lamiaceae) 期刊论文
TAXON, 2023
作者:  Zhao,Yue;  Zhao,Fei;  Salmaki,Yasaman;  Paton,Alan;  Cai,Jie;  Drew,Bryan T.;  Mahmoudi,Chonour;  Efimov,Petr;  Turginov,Orzimat T.;  Liang,Cun-Zhu;  Chen,Ya-Ping;  Xiang,Chun-Lei
浏览  |  Adobe PDF(2112Kb)  |  收藏  |  浏览/下载：29/8  |  提交时间：2024/07/10
Central Asia  Lamioideae  nrITS  Phlomideae  Phlomis  plastome phylogenomics  COMPLETE CHLOROPLAST GENOME  PLASTID DNA  LEPECHINIA LAMIACEAE  LAMIOIDEAE LAMIACEAE  CHARACTER EVOLUTION  NUCLEAR  CLASSIFICATION  POSITION  ORIGIN  GENERA  
A clue to the evolutionary history of modern East Asian flora: Insights from phylogeography and diterpenoid alkaloid distribution pattern of the Spiraea japonica complex 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2023, 卷号: 184, 页码: 107772
作者:  Luo,Dong;  Song,Min-shu;  Xu,Bo;  Zhang,Yu;  Zhang,Jian-wen;  Ma,Xiang-guang;  Hao,Xiao jiang;  Sun,Hang
Adobe PDF(12334Kb)  |  收藏  |  浏览/下载：52/15  |  提交时间：2024/07/25
ampliative Spiraea japonica complex  East Asian flora  Transition belt  Phylogeography  Diterpenoid alkaloids  MOLECULAR PHYLOGEOGRAPHY  SECONDARY METABOLITES  HENGDUAN MOUNTAINS  QUATERNARY CLIMATE  PLANT DIVERSITY  ROSACEAE  DNA  CHLOROPLAST  COALESCENT  CHINA  
Complete chloroplast genomes of four Atalantia (Rutaceae) species: insights into comparative analysis, phylogenetic relationships, and divergence time estimation 期刊论文
PLANT SYSTEMATICS AND EVOLUTION, 2023, 卷号: 309, 期号: 5, 页码: 31
作者:  Shi,Wenbo;  Song,Weicai;  Zhao,Yuqi;  Shi,Chao;  Wang,Shuo
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Atalantia  Chloroplast genome  Comparative analysis  Divergence times  Molecular markers  Phylogeny  ACETYL-COA CARBOXYLASE  CITRUS  SEQUENCE  AURANTIOIDEAE  EVOLUTION  DIVERSITY  FOSSIL  DNA  BIOGEOGRAPHY  RADIATIONS  
Uncovering the first complete chloroplast genomics, comparative analysis, and phylogenetic relationships of the medicinal plants Rhamnus cathartica and Frangula alnus (Rhamnaceae) 期刊论文
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2023, 卷号: 29, 期号: 6, 页码: 855-869
作者:  Shi,Wenbo;  Hu,Siqi;  Song,Weicai;  Huang,Yahui;  Shi,Chao;  Wang,Shuo
浏览  |  Adobe PDF(7970Kb)  |  收藏  |  浏览/下载：83/24  |  提交时间：2024/05/09
Rhamnus  Frangula alnus  Chloroplast genome  Comparative analysis  Divergence  Phylogenetic analysis  PHOTOSYSTEM-II  SEQUENCE  DNA  EVOLUTION  NUCLEAR  ORGANIZATION  POPULATIONS  DIVERSITY  GENES  PSBL  
Characteristics of plastid genomes in the genus Ceratostigma inhabiting arid habitats in China and their phylogenomic implications 期刊论文
BMC PLANT BIOLOGY, 2023, 卷号: 23, 期号: 1, 页码: 303
作者:  Zhao,Yu-Juan;  Liu,Jian;  Yin,Gen-Shen;  Gong,Xun
浏览  |  Adobe PDF(4758Kb)  |  收藏  |  浏览/下载：88/19  |  提交时间：2024/05/09
Ceratostigma  Plastid genome  Comparative analysis  Interspecific relationship  Plumbaginaceae  COMPLETE CHLOROPLAST GENOME  MEKONG-SALWEEN DIVIDE  LIMONIUM-SINENSE  INVERTED REPEAT  SEQUENCE  EVOLUTION  DNA  PLUMBAGINACEAE  CONSEQUENCES  DIVERSITY  
Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia 期刊论文
PLANT DIVERSITY, 2023, 卷号: 45, 期号: 2, 页码: 147-155
作者:  Lv,Shi-Yu;  Ye,Xia-Ying;  Li,Zhong-Hu;  Ma,Peng-Fei;  Li,De-Zhu
浏览  |  Adobe PDF(2234Kb)  |  收藏  |  浏览/下载：105/25  |  提交时间：2024/05/09
Fargesia  Genome-skimming  DNA barcoding  Plastome  Ribosomal DNA  WHOLE CHLOROPLAST GENOMES  RNA-SEQ DATA  ARUNDINARIEAE POACEAE  BAMBUSOIDEAE  TEMPERATE  PLATFORM  
Comparative Analysis of the Characteristics, Phylogenetic Relationships of the Complete Chloroplast Genome, and Maternal Origin Track of White Poplar Interspecific Hybrid GM107 期刊论文
FORESTS, 2023, 卷号: 14, 期号: 3, 页码: 587
作者:  Guo,Bin;  Chen,Tingting;  Li,Ying;  Li,Shanwen;  Khan,Wasif Ullah;  Zhang,Ren-Gang;  Jia,Kai-Hua;  An,Xinmin
浏览  |  Adobe PDF(5063Kb)  |  收藏  |  浏览/下载：42/13  |  提交时间：2024/05/09
chloroplast genome  phylogenetic analysis  white poplars  transcriptome  DNA  SOFTWARE  SEQUENCE  LIFE  
Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1125107
作者:  Tyszka,Alexa S.;  Bretz,Eric C.;  Robertson,Holly M.;  Woodcock-Girard,Miles D.;  Ramanauskas,Karolis;  Larson,Drew A.;  Stull,Gregory W.;  Walker,Joseph F.
浏览  |  Adobe PDF(854Kb)  |  收藏  |  浏览/下载：54/12  |  提交时间：2024/05/09
phylogenetics  plastome  mitochondrial genome  chloroplast genome  phylogenomics  combinability  phylogenetic conflict  MITOCHONDRIAL GENOMES  PENALIZED LIKELIHOOD  NUCLEOTIDE-SEQUENCES  EXTANT GYMNOSPERMS  DYNAMIC EVOLUTION  CHLOROPLAST DNA  SEED PLANTS  GENE  RATES  RECOMBINATION