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Phylotranscriptomic analyses reveal multiple whole-genome duplication events, the history of diversification and adaptations in the Araceae 期刊论文
ANNALS OF BOTANY, 2022
作者:  Zhao, Lei;  Yang, Ying-Ying;  Qu, Xiao-Jian;  Ma, Hong;  Hu, Yi;  Li, Hong-Tao;  Yi, Ting-Shuang;  Li, De-Zhu
浏览  |  Adobe PDF(1678Kb)  |  收藏  |  浏览/下载：14/2  |  提交时间：2024/04/30
Araceae  diversification  phylogenomics  WGDs  adaptation  TRAIT-DEPENDENT SPECIATION  GENE DUPLICATION  ANGIOSPERM DIVERSIFICATION  PHYLOGENOMIC ANALYSES  NUCLEAR GENES  POLYPLOIDY  EVOLUTIONARY  FAMILY  RATES  TOOL  
Genetic diversity and structure of Rhododendron meddianum, a plant species with extremely small populations 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 6, 页码: 472-479
作者:  Zhang,Xiu-Jiao;  Liu,Xiong-Fang;  Liu,De-Tuan;  Cao,Yu-Rong;  Li,Zheng-Hong;  Ma,Yong-Peng;  Ma,Hong
收藏  |  浏览/下载：74/0  |  提交时间：2022/04/02
Rhododendron meddianum  ddRAD  Genetic diversity  Population demography  Conservation implications  DEMOGRAPHIC HISTORY  TOOL SET  ERICACEAE  SOFTWARE  LOCI  PHYLOGENY  INFERENCE  BIOLOGY  MARKERS  STACKS  
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae 期刊论文
MOLECULAR PLANT, 2021, 卷号: 14, 期号: 5, 页码: 748-773
作者:  Zhao,Yiyong;  Zhang,Rong;  Jiang,Kai-Wen;  Qi,Ji;  Hu,Yi;  Guo,Jing;  Zhu,Renbin;  Zhang,Taikui;  Egan,Ashley N.;  Yi,Ting-Shuang;  Huang,Chien-Hsun;  Ma,Hong
收藏  |  浏览/下载：68/0  |  提交时间：2022/04/02
Fabaceae  Leguminosae  nuclear phylogeny  divergence times  whole-genome duplication  rhizobial nodulation  COMPARATIVE GENOMICS  PHYLOGENETIC PERSPECTIVES  EARLY DIVERSIFICATION  PENALIZED LIKELIHOOD  ANCESTRAL POLYPLOIDY  MOLECULAR EVOLUTION  LOTUS-JAPONICUS  ANALYSES REVEAL  GENE  LEGUMINOSAE  
Chromosome-level genome assembly and population genetic analysis of a critically endangered rhododendron provide insights into its conservation 期刊论文
PLANT JOURNAL, 2021, 卷号: 107, 期号: 5, 页码: 1533-1545
作者:  Ma,Hong;  Liu,Yongbo;  Liu,Detuan;  Sun,Weibang;  Liu,Xiongfang;  Wan,Youming;  Zhang,Xiujiao;  Zhang,Rengang;  Yun,Quanzheng;  Wang,Jihua;  Li,Zhenghong;  Ma,Yongpeng
收藏  |  浏览/下载：71/0  |  提交时间：2022/04/02
genome sequencing  rhododendrons  deleterious mutation  population demography  conservation  HI-C  ANNOTATION  YUNNAN  TOOL  SELECTION  SEQUENCE  PROGRAM  SYSTEM  TREE  
Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms 期刊论文
NATURE PLANTS, 2021, 卷号: 7, 期号: 8, 页码: 1015+
作者:  Stull,Gregory W.;  Qu,Xiao-Jian;  Parins-Fukuchi,Caroline;  Yang,Ying-Ying;  Yang,Jun-Bo;  Yang,Zhi-Yun;  Hu,Yi;  Ma,Hong;  Soltis,Pamela S.;  Soltis,Douglas E.;  Li,De-Zhu;  Smith,Stephen A.;  Yi,Ting-Shuang
浏览  |  Adobe PDF(3414Kb)  |  收藏  |  浏览/下载：149/71  |  提交时间：2022/04/02
SEED PLANTS  R PACKAGE  POLYPLOIDY  CONIFERS  TREE  GENERATION  INFERENCE  ANCIENT  DISCORDANCE  ANGIOSPERMS  
The hornwort genome and early land plant evolution 期刊论文
NATURE PLANTS, 2020, 卷号: 6, 期号: 2, 页码: 107-118
作者:  Zhang, Jian;  Fu, Xin-Xing;  Li, Rui-Qi;  Zhao, Xiang;  Liu, Yang;  Li, Ming-He;  Zwaenepoel, Arthur;  Ma, Hong;  Goffinet, Bernard;  Guan, Yan-Long;  Xue, Jia-Yu;  Liao, Yi-Ying;  Wang, Qing-Feng;  Wang, Qing-Hua;  Wang, Jie-Yu;  Zhang, Guo Qiang;  Wang, Zhi-Wen;  Jia, Yu;  Wang, Mei-Zhi;  Dong, Shan-Shan;  Yang, Jian-Fen;  Jiao, Yuan-Nian;  Guo, Ya-Long;  Kong, Hong-Zhi;  Lu, An-Ming;  Yang, Huan-Ming;  Zhang, Shou-Zhou;  Van de Peer, Yves;  Liu, Zhong-Jian;  Chen, Zhi-Duan
收藏  |  浏览/下载：171/0  |  提交时间：2020/03/24
Genetic Diversity of Phyllanthus emblica From Two Different Climate Type Areas 期刊论文
FRONTIERS IN PLANT SCIENCE, 2020
作者:  Liu, Xiongfang;  Ma, Yongpeng;  Wan, Youming;  Li, Zhenghong;  Ma, Hong
浏览  |  Adobe PDF(1051Kb)  |  收藏  |  浏览/下载：91/22  |  提交时间：2021/01/05
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 卷号: 34, 期号: 2, 页码: 262-281
作者:  Xiang,Yezi;  Huang,Chien-Hsun;  Hu,Yi;  Wen,Jun;  Li,Shisheng;  Yi,Tingshuang;  Chen,Hongyi;  Xiang,Jun;  Ma,Hong
浏览  |  Adobe PDF(5900Kb)  |  收藏  |  浏览/下载：239/50  |  提交时间：2017/10/23
Northeastern Washington-state  Sequence Data  Molecular Phylogenetics  British-columbia  Divergence Times  Prunus Rosaceae  Ribosomal Dna  Early Eocene  Gene Data  Polyploidy  Coalescence  Fruit Evolution  Molecular Clock  Nuclear Phylogeny  Rosaceae  Genome Duplication  
Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 卷号: 105, 期号: 1, 页码: 166-176
作者:  Zhao, Lei;  Li, Xia;  Zhang, Ning;  Zhang, Shu-Dong;  Yi, Ting-Shuang;  Ma, Hong;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(2059Kb)  |  收藏  |  浏览/下载：358/65  |  提交时间：2016/12/21
Coalescence  Rosids Phylogenomics  Nuclear Genes  Gene Tree  Species Tree  
The Tree of Life: China project 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2016, 卷号: 54, 期号: 4, 页码: CP5-276
作者:  Chen, Zhi-Duan;  Lu, An-Ming;  Zhang, Shou-Zhou;  Wang, Qing-Feng;  Liu, Zhong-Jian;  Li, De-Zhu;  Ma, Hong;  Li, Jian-Hua;  Soltis, Douglas E.;  Soltis, Pamela S.;  Wen, Jun;  China Phylogeny Consortium
浏览  |  Adobe PDF(107Kb)  |  收藏  |  浏览/下载：214/65  |  提交时间：2017/01/05