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Complete chloroplast genomes of four Atalantia (Rutaceae) species: insights into comparative analysis, phylogenetic relationships, and divergence time estimation 期刊论文
PLANT SYSTEMATICS AND EVOLUTION, 2023, 卷号: 309, 期号: 5, 页码: 31
Authors:  Shi,Wenbo;  Song,Weicai;  Zhao,Yuqi;  Shi,Chao;  Wang,Shuo
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Atalantia  Chloroplast genome  Comparative analysis  Divergence times  Molecular markers  Phylogeny  ACETYL-COA CARBOXYLASE  CITRUS  SEQUENCE  AURANTIOIDEAE  EVOLUTION  DIVERSITY  FOSSIL  DNA  BIOGEOGRAPHY  RADIATIONS  
Uncovering the first complete chloroplast genomics, comparative analysis, and phylogenetic relationships of the medicinal plants Rhamnus cathartica and Frangula alnus (Rhamnaceae) 期刊论文
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2023, 卷号: 29, 期号: 6, 页码: 855-869
Authors:  Shi,Wenbo;  Hu,Siqi;  Song,Weicai;  Huang,Yahui;  Shi,Chao;  Wang,Shuo
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Rhamnus  Frangula alnus  Chloroplast genome  Comparative analysis  Divergence  Phylogenetic analysis  PHOTOSYSTEM-II  SEQUENCE  DNA  EVOLUTION  NUCLEAR  ORGANIZATION  POPULATIONS  DIVERSITY  GENES  PSBL  
Characteristics of plastid genomes in the genus Ceratostigma inhabiting arid habitats in China and their phylogenomic implications 期刊论文
BMC PLANT BIOLOGY, 2023, 卷号: 23, 期号: 1, 页码: 303
Authors:  Zhao,Yu-Juan;  Liu,Jian;  Yin,Gen-Shen;  Gong,Xun
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Comparative Analysis and Characterization of Ten Complete Chloroplast Genomes of Eremurus Species (Asphodelaceae) 期刊论文
FORESTS, 2023, 卷号: 14, 期号: 9, 页码: 1709
Authors:  Makhmudjanov,Dilmurod;  Abdullaev,Davlatali;  Juramurodov,Inom;  Tuychiev,Shakhzodbek;  Yusupov,Ziyoviddin;  Sun,Hang;  Tojibaev,Komiljon;  Deng,Tao
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Eremurus  chloroplast genome  codon usage  comparative analysis  phylogeny  protein-coding genes  MULTIPLE SEQUENCE ALIGNMENT  PHYLOGENETIC ANALYSIS  GENE-EXPRESSION  TRNL-F  SYSTEMATICS  EVOLUTION  INTRON  TOOL  
Comparative analysis of the medicinal plant Polygonatum kingianum (Asparagaceae) with related verticillate leaf types of the Polygonatum species based on chloroplast genomes 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1202634
Authors:  Shi,Naixing;  Yang,Zefen;  Miao,Ke;  Tang,Lilei;  Zhou,Nian;  Xie,Pingxuan;  Wen,Guosong
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Polygonatum  verticillate leaf  Polygonatum kingianum  chloroplast genome  comparative analysis  phylogenetic analysis  CODON USAGE  GENUS POLYGONATUM  SOFTWARE  TRANSFERABILITY  MITOCHONDRIAL  MARKERS  MODEL  
First comparative analysis of complete chloroplast genomes among six Hedysarum (Fabaceae) species 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1211247
Authors:  Juramurodov,Inom;  Makhmudjanov,Dilmurod;  Yusupov,Ziyoviddin;  Tojibaev,Komiljon
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Hedysarum  chloroplast genome  comparative analysis  phylogeny  protein-coding genes  MAXIMUM-LIKELIHOOD  GENE-EXPRESSION  TRNL-F  SEQUENCE  MATK  ORGANIZATION  SYSTEMATICS  PHYLOGENY  INTRON  NRDNA  
Comparative plastome genomics and phylogenetic relationships of the genus Trollius 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1293091
Authors:  Li,Jiaxin;  Du,Yan;  Xie,Lei;  Jin,Xiaohua;  Zhang,Zhirong;  Yang,Meiqing
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Trollius  plastome  comparative analysis  divergent hotspots  phylogenetic relationships  COMPLETE CHLOROPLAST GENOME  SEQUENCE  RANUNCULACEAE  REPEATS  PLANT  DNA  
Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies 期刊论文
PLANT COMMUNICATIONS, 2023, 卷号: 4, 期号: 1, 页码: 100427
Authors:  Yin,Xin;  Yang,Danni;  Zhao,Youjie;  Yang,Xingyu;  Zhou,Zhili;  Sun,Xudong;  Kong,Xiangxiang;  Li,Xiong;  Wang,Guangyan;  Duan,Yuanwen;  Yang,Yunqiang;  Yang,Yongping
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turnip genome  comparative genomics  pseudogene evolution  GSL biosynthesis  flavor  Brassicaceae lineage -specific polyploidization events (whole  WHOLE-GENOME TRIPLICATION  PHYLOGENETIC ANALYSIS  GLUCOSINOLATE CONTENT  ARABIDOPSIS  IDENTIFICATION  OLERACEA  EXPRESSION  SEQUENCE  ORIGIN  DIVERSIFICATION  
Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin 期刊论文
PEERJ, 2023, 卷号: 11, 页码: e14573
Authors:  Shi,Wenbo;  Song,Weicai;  Chen,Zimeng;  Cai,Haohong;  Gong,Qin;  Liu,Jin;  Shi,Chao;  Wang,Shuo
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Phoebe  Chloroplast genome  Comparative analysis  Phylogeny  Phylogeographical origin  Conservation  POLYMORPHISM ANALYSIS  SEQUENCE  DNA  ANNOTATION  REGION  TOOLS  
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales 期刊论文
NEW PHYTOLOGIST, 2022, 卷号: 233, 期号: 3, 页码: 1383-1400
Authors:  Wu,Gang;  Miyauchi,Shingo;  Morin,Emmanuelle;  Kuo,Alan;  Drula,Elodie;  Varga,Torda;  Kohler,Annegret;  Feng,Bang;  Cao,Yang;  Lipzen,Anna;  Daum,Christopher;  Hundley,Hope;  Pangilinan,Jasmyn;  Johnson,Jenifer;  Barry,Kerrie;  LaButti,Kurt;  Ng,Vivian;  Ahrendt,Steven;  Min,Byoungnam;  Choi,In-Geol;  Park,Hongjae;  Plett,Jonathan M.;  Magnuson,Jon;  Spatafora,Joseph W.;  Nagy,Laszlo G.;  Henrissat,Bernard;  Grigoriev,Igor V.;  Yang,Zhu-Liang;  Xu,Jianping;  Martin,Francis M.
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Boletales  brown-rot fungi  CAZymes  comparative genomics  ectomycorrhizal fungi  trait evolution  R/BIOCONDUCTOR PACKAGE  PHYLOGENETIC ANALYSIS  HOST-SPECIFICITY  FUNGI  GENUS  DIVERSITY