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High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 期号: 12, 页码: 2544-2560
Authors:  Wang,Xiuyun;  Gao,Yuan;  Wu,Xiaopei;  Wen,Xiaohui;  Li,Danqing;  Zhou,Hong;  Li,Zheng;  Liu,Bing;  Wei,Jianfen;  Chen,Fei;  Chen,Feng;  Zhang,Chengjun;  Zhang,Liangsheng;  Xia,Yiping
Favorite  |  View/Download：25/0  |  Submit date：2022/04/02
Azalea  Rhododendron ovatum  altitude  adaptability  floral scent  terpene synthase (TPS)  tandem duplication  defence response  PHYLOGENETIC ANALYSIS  TERPENE SYNTHASES  PLANT VOLATILES  SALICYLIC-ACID  JASMONIC ACID  WHOLE-GENOME  GENE  DIVERSITY  TOOL  TRANSCRIPTOME  
New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 12, 页码: 5752-5768
Authors:  Jin,Guihua;  Ma,Peng-Fei;  Wu,Xiaopei;  Gu,Lianfeng;  Long,Manyuan;  Zhang,Chengjun;  Li,De-Zhu
Favorite  |  View/Download：28/0  |  Submit date：2022/04/02
fast stem growth  orphan genes  de novo genes  WGD  woody bamboos  evolutionary innovation  EVOLUTIONARY ORIGIN  DROSOPHILA-MELANOGASTER  PHYLOGENETIC ANALYSIS  VERTEBRATE EVOLUTION  RAPID EVOLUTION  HUMAN TISSUE  YOUNG GENES  TRANSCRIPTION  EXPRESSION  HOURGLASS  
The Rhododendron Plant Genome Database (RPGD): a comprehensive online omics database for Rhododendron 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1, 页码: 376
Authors:  Liu,Ningyawen;  Zhang,Lu;  Zhou,Yanli;  Tu,Mengling;  Wu,Zhenzhen;  Gui,Daping;  Ma,Yongpeng;  Wang,Jihua;  Zhang,Chengjun
Favorite  |  View/Download：18/0  |  Submit date：2022/04/02
Rhododendron  Horticulture plant  Database  Functional genomics  COMPLETE CHLOROPLAST GENOME  ERICACEAE  YUNNAN  DNA  
The new chimeric chiron genes evolved essential roles in zebrafish embryonic development by regulating NAD(+) levels 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2021, 卷号: 64, 期号: 11, 页码: 1929-1948
Authors:  Fang,Chengchi;  Gan,Xiaoni;  Zhang,Chengjun;  He,Shunping
Favorite  |  View/Download：13/0  |  Submit date：2022/04/02
new chimeric genes  essential function  NAD plus rate-limiting enzyme  coevolution  COLONY-ENHANCING FACTOR  DE-NOVO ORIGINATION  PHYLOGENETIC ANALYSIS  PROTEIN DIVERSITY  RAPID EVOLUTION  DUPLICATE GENES  GENERATION TIME  PATHWAY  YOUNG  NEOFUNCTIONALIZATION  
Divergence and hybridization in the desert plant Reaumuria soongarica 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020
Authors:  Shi, Yong;  Yan, Xia;  Yin, Heng-Xia;  Qian, Chao-Ju;  Fan, Xing-Ke;  Yin, Xiao-Yue;  Chang, Yu-Xiao;  Zhang, Cheng-Jun;  Ma, Xiao-Fei
Adobe PDF(2422Kb)  |  Favorite  |  View/Download：57/11  |  Submit date：2021/01/05
Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 页码: 11
Authors:  Jin, Gui-Hua;  Zhou, Yan-Li;  Yang, Hong;  Hu, Yan-Ting;  Shi, Yong;  Li, Ling;  Siddique, Abu N.;  Liu, Chang-Ning;  Zhu, An-Dan;  Zhang, Cheng-Jun;  Li, De-Zhu
Adobe PDF(845Kb)  |  Favorite  |  View/Download：200/101  |  Submit date：2020/03/17
comparative genomics  origin  orphan gene  transposable element  
Evolutionary patterns of chimeric retrogenes in Oryza species 期刊论文
SCIENTIFIC REPORTS, 2019, 卷号: 9, 页码: 12
Authors:  Zhou, Yanli;  Zhang, Chengjun
Adobe PDF(2334Kb)  |  Favorite  |  View/Download：53/8  |  Submit date：2020/03/02
Alternative splicing coupled to nonsense-mediated mRNA decay contributes to the high-altitude adaptation of maca (Lepidium meyenii) 期刊论文
GENE, 2019, 卷号: 694, 页码: 7-18
Authors:  Shi, Yong;  Su, Zechun;  Yang, Hong;  Wang, Wenzhi;  Jin, Guihua;  He, Guiqing;  Siddique, Abu Nasar;  Zhang, Liangsheng;  Zhu, Andan;  Xue, Runguang;  Zhang, Chengjun
Adobe PDF(1643Kb)  |  Favorite  |  View/Download：177/17  |  Submit date：2019/07/29
Alpine plants  Post-transcriptome  Intron retention  Alternative 3 ' splice site  Long non-coding RNA  Positive selection  
Rapid evolution of protein diversity by de novo origination in Oryza 期刊论文
NATURE ECOLOGY & EVOLUTION, 2019, 卷号: 3, 期号: 4, 页码: 679-690
Authors:  Zhang, Li;  Ren, Yan;  Yang, Tao;  Li, Guangwei;  Chen, Jianhai;  Gschwend, Andrea R.;  Yu, Yeisoo;  Hou, Guixue;  Zi, Jin;  Zhou, Ruo;  Wen, Bo;  Zhang, Jianwei;  Chougule, Kapeel;  Wang, Muhua;  Copetti, Dario;  Peng, Zhiyu;  Zhang, Chengjun;  Zhang, Yong;  Ouyang, Yidan;  Wing, Rod A.;  Liu, Siqi;  Long, Manyuan
Adobe PDF(1636Kb)  |  Favorite  |  View/Download：110/13  |  Submit date：2019/07/29
Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 页码: 16
Authors:  Li, Ping;  Yang, Hong;  Wang, Lu;  Liu, Haoju;  Huo, Heqiang;  Zhang, Chengjun;  Liu, Aizhong;  Zhu, Andan;  Hu, Jinyong;  Lin, Yongjun;  Liu, Li
Adobe PDF(3475Kb)  |  Favorite  |  View/Download：171/7  |  Submit date：2019/03/18
ssRNA-Seq  short-term drought memory  ABA  photosynthesis  proline  memory factors