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Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos 期刊论文
SYSTEMATIC BIOLOGY, 2021, 卷号: 70, 期号: 4, 页码: 756-773
作者:  Guo,Cen;  Ma,Peng-Fei;  Yang,Guo-Qian;  Ye,Xia-Ying;  Guo,Ying;  Liu,Jing-Xia;  Liu,Yun-Long;  Eaton,Deren A. R.;  Guo,Zhen-Hua;  Li,De-Zhu
收藏  |  浏览/下载:106/0  |  提交时间:2022/04/02
Arundinarieae  ddRAD  paleopolyploid  genome skimming  rapid diversification  incongruence  ARUNDINARIEAE POACEAE BAMBUSOIDEAE  SOUTH CHINA SEA  WOODY BAMBOOS  PHYLOGENOMIC ANALYSES  ADAPTIVE RADIATION  ECOLOGICAL OPPORTUNITY  PLANT DIVERSIFICATION  ASIAN MONSOON  RADSEQ DATA  GENE TREES  
Rapid diversification of alpine bamboos associated with the uplift of the Hengduan Mountains 期刊论文
JOURNAL OF BIOGEOGRAPHY, 2019, 页码: 12
作者:  Ye, Xia-Ying;  Ma, Peng-Fei;  Yang, Guo-Qian;  Guo, Cen;  Zhang, Yu-Xiao;  Chen, Yun-Mei;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(2351Kb)  |  收藏  |  浏览/下载:227/44  |  提交时间:2019/12/20
alpine bamboos  ddRAD-seq  diversification  molecular dating  mountain uplift  phylogeny  
Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae) 期刊论文
PLANT DIVERSITY, 2019, 卷号: 41, 期号: 4, 页码: 213-219
作者:  Guo, Cen;  Guo, Zhen-Hua;  Li, De-Zhu
浏览  |  Adobe PDF(690Kb)  |  收藏  |  浏览/下载:160/23  |  提交时间:2019/10/28
Shibataea  ddRAD-seq  Genome skimming  Phylogeny  Incongruence  
Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics 期刊论文
BMC PLANT BIOLOGY, 2017, 卷号: 17, 期号: 1, 页码: 260
作者:  Ma, Peng-Fei;  Vorontsova, Maria S.;  Nanjarisoa, Olinirina Prisca;  Razanatsoa, Jacqueline;  Guo, Zhen-Hua;  Haevermans, Thomas;  Li, De-Zhu
浏览  |  Adobe PDF(1340Kb)  |  收藏  |  浏览/下载:775/236  |  提交时间:2018/05/08
Temperate Woody Bamboos  Infrequent Flowering  Plastid Phylogenomics  Molecular Evolution  Rate Heterogeneity  Generation Time  
Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos (Poaceae: Bambusoideae) 期刊论文
SCIENTIFIC REPORTS, 2017, 卷号: 7, 期号: 1, 页码: 11546
作者:  Wang, Xueqin;  Ye, Xiaying;  Zhao, Lei;  Li, Dezhu;  Guo, Zhenhua;  Zhuang, Huifu
Adobe PDF(1943Kb)  |  收藏  |  浏览/下载:247/39  |  提交时间:2017/10/23
Arundinarieae Poaceae  Population Genomics  Inferring Phylogeny  Thamnocalamus Group  Allies Gramineae  Rpl16 Intron  Gbssi Gene  Evolution  Identification  Framework  
Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 卷号: 96, 期号: 1, 页码: 118-129
作者:  Zhang, Xian-Zhi;  Zeng, Chun-Xia;  Ma, Peng-Fei;  Haevermans, Thomas;  Zhang, Yu-Xiao;  Zhang, Li-Na;  Guo, Zhen-Hua;  Li, De-Zhu
Adobe PDF(4387Kb)  |  收藏  |  浏览/下载:284/58  |  提交时间:2016/06/27
Arundinarieae  Biogeography  Multi-locus Plastid Phylogeny  Divergence Time  Rapid Radiation  Bambusoideae  
Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus 期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5, 页码: 11608
作者:  Ma, Peng-Fei;  Zhang, Yu-Xiao;  Guo, Zhen-Hua;  Li, De-Zhu;  Li,DZ (reprint author),Chinese Acad Sci,Kunming Inst Bot,Key Lab Plant Div & Biogeog East Asia,Kunming 650201,Yunnan,Peoples R China.;  dzl@mail.kib.ac.cn
Adobe PDF(980Kb)  |  收藏  |  浏览/下载:428/102  |  提交时间:2015/07/20
Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae) 期刊论文
SYSTEMATIC BIOLOGY, 2014, 卷号: 63, 期号: 6, 页码: 933-950
作者:  Ma, Peng-Fei;  Zhang, Yu-Xiao;  Zeng, Chun-Xia;  Guo, Zhen-Hua;  Li, De-Zhu;  Li,DZ (reprint author),Chinese Acad Sci,Kunming Inst Bot,132 Lanhei Rd,Kunming 650201,Yunnan,Peoples R China.;  dzl@mail.kib.ac.cn
Adobe PDF(1435Kb)  |  收藏  |  浏览/下载:520/139  |  提交时间:2015/01/20
Branch Length  Chloroplast Phylogenomics  Data Partitioning  Low Sequence Divergence  Sampling  Temperate Woody Bamboos  
Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae) 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2014, 卷号: 14, 期号: 5, 页码: 988-999
作者:  Zhang, Li-Na;  Zhang, Xian-Zhi;  Zhang, Yu-Xiao;  Zeng, Chun-Xia;  Ma, Peng-Fei;  Zhao, Lei;  Guo, Zhen-Hua;  Li, De-Zhu;  Li, DZ (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Div & Biogeog East Asia, Kunming 650201, Yunnan, Peoples R China.;  dzl@mail.kib.ac.cn
Adobe PDF(406Kb)  |  收藏  |  浏览/下载:373/64  |  提交时间:2014/10/11
Arundinarieae  Fargesia  Orthologous Genes  Phyllostachys  Phylogeny  
Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 5, 页码: e64642
作者:  Zhao, Lei;  Zhang, Ning;  Ma, Peng-Fei;  Liu, Qi;  Li, De-Zhu;  Guo, Zhen-Hua
Adobe PDF(1078Kb)  |  收藏  |  浏览/下载:880/248  |  提交时间:2013/07/24
Rna-recognition Motif  Translation Initiation-factor  Multiple Sequence Alignment  Protein-coding Sequences  Likelihood Ratio Tests  Grass Family Poaceae  Arabidopsis-thaliana  Adaptive Evolution  Molecular Evolution  Plant Phylogenetics