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Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection 期刊论文
PLANT CELL, 2022, 卷号: 34, 期号: 2, 页码: 802-817
作者:  Huang, Yuan;  Chen, Jiahui;  Dong, Chuan;  Sosa, Dylan;  Xia, Shengqian;  Ouyang, Yidan;  Fan, Chuanzhu;  Li, Dezhu;  Mortola, Emily;  Long, Manyuan;  Bergelson, Joy
Adobe PDF(1955Kb)  |  收藏  |  浏览/下载：44/3  |  提交时间：2024/03/11
Gene fusion as an important mechanism to generate new genes in the genus Oryza 期刊论文
GENOME BIOLOGY, 2022, 卷号: 23, 期号: 1, 页码: 130
作者:  Zhou, Yanli;  Zhang, Chengjun;  Zhang, Li;  Ye, Qiannan;  Liu, Ningyawen;  Wang, Muhua;  Long, Guangqiang;  Fan, Wei;  Lon, Manyuan;  Wing, Rod A.
Adobe PDF(2953Kb)  |  收藏  |  浏览/下载：14/4  |  提交时间：2024/04/30
Fusion gene  Oryza  Evolutionary patterns  Phenotype  TRANSPOSABLE ELEMENTS  RAPID EVOLUTION  CHIMERIC GENES  RICE GENOME  DUPLICATION  EXPRESSION  RETROPOSITION  ORIGINATION  COMPLEXITY  GLABERRIMA  
New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 卷号: 38, 期号: 12, 页码: 5752-5768
作者:  Jin,Guihua;  Ma,Peng-Fei;  Wu,Xiaopei;  Gu,Lianfeng;  Long,Manyuan;  Zhang,Chengjun;  Li,De-Zhu
收藏  |  浏览/下载：87/0  |  提交时间：2022/04/02
fast stem growth  orphan genes  de novo genes  WGD  woody bamboos  evolutionary innovation  EVOLUTIONARY ORIGIN  DROSOPHILA-MELANOGASTER  PHYLOGENETIC ANALYSIS  VERTEBRATE EVOLUTION  RAPID EVOLUTION  HUMAN TISSUE  YOUNG GENES  TRANSCRIPTION  EXPRESSION  HOURGLASS  
Rapid evolution of protein diversity by de novo origination in Oryza 期刊论文
NATURE ECOLOGY & EVOLUTION, 2019, 卷号: 3, 期号: 4, 页码: 679-690
作者:  Zhang, Li;  Ren, Yan;  Yang, Tao;  Li, Guangwei;  Chen, Jianhai;  Gschwend, Andrea R.;  Yu, Yeisoo;  Hou, Guixue;  Zi, Jin;  Zhou, Ruo;  Wen, Bo;  Zhang, Jianwei;  Chougule, Kapeel;  Wang, Muhua;  Copetti, Dario;  Peng, Zhiyu;  Zhang, Chengjun;  Zhang, Yong;  Ouyang, Yidan;  Wing, Rod A.;  Liu, Siqi;  Long, Manyuan
Adobe PDF(1636Kb)  |  收藏  |  浏览/下载：231/48  |  提交时间：2019/07/29
gKaKs: The pipeline for genome level Ka/Ks calculation 期刊论文
Bioinformatics, 2013, 期号: doi:10.1093
作者:  Chengjun Zhang;  Jun Wang;  Manyuan Long;  Chuanzhu Fan
Adobe PDF(99Kb)  |  收藏  |  浏览/下载：228/47  |  提交时间：2014/11/10
Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method 期刊论文
Proc Natl Acad Sci USA, 2011, 期号: 108(19):7860-7865
作者:  Chengjun Zhang;  Jia Wang;  Weibo Xie;  Gang Zhou;  Manyuan Long;  Qifa Zhang
Adobe PDF(265Kb)  |  收藏  |  浏览/下载：180/45  |  提交时间：2014/11/10