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Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants 期刊论文
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1125107
作者:  Tyszka,Alexa S.;  Bretz,Eric C.;  Robertson,Holly M.;  Woodcock-Girard,Miles D.;  Ramanauskas,Karolis;  Larson,Drew A.;  Stull,Gregory W.;  Walker,Joseph F.
浏览  |  Adobe PDF(854Kb)  |  收藏  |  浏览/下载：171/38  |  提交时间：2024/05/09
phylogenetics  plastome  mitochondrial genome  chloroplast genome  phylogenomics  combinability  phylogenetic conflict  MITOCHONDRIAL GENOMES  PENALIZED LIKELIHOOD  NUCLEOTIDE-SEQUENCES  EXTANT GYMNOSPERMS  DYNAMIC EVOLUTION  CHLOROPLAST DNA  SEED PLANTS  GENE  RATES  RECOMBINATION  
睡莲基因组图谱构建与细胞器RNA转录后加工 学位论文
, 2021
作者:  贺正山
Adobe PDF(20680Kb)  |  收藏  |  浏览/下载：68/1  |  提交时间：2024/03/20
Deciphering the Taxonomic Delimitation of Ottelia acuminata (Hydrocharitaceae) Using Complete Plastomes as Super-Barcodes 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12, 页码: 681270
作者:  Ji,Yunheng;  Yang,Jin;  Landis,Jacob B.;  Wang,Shuying;  Yang,Zhenyan;  Zhang,Yonghong
浏览  |  Adobe PDF(2922Kb)  |  收藏  |  浏览/下载：339/129  |  提交时间：2022/04/02
species boundary  molecular identification  DNA barcoding  taxonomy  threatened species  aquatic plant  SPECIES DELIMITATION  DNA BARCODES  MACROPHYTE DECLINE  CONSERVATION  GENOMES  BIODIVERSITY  GENETICS  MODEL  LAKES  SPP.  
The complete plastomes of two flowering epiparasites (Phacellaria glomerata and P. compressa): Gene content, organization, and plastome degradation 期刊论文
GENOMICS, 2021, 卷号: 113, 期号: 2, 页码: 447-455
作者:  Guo,Xiaorong;  Liu,Changkun;  Wang,Hengchang;  Zhang,Guangfei;  Yan,Hanjing;  Jin,Lei;  Su,Wenhua;  Ji,Yunheng
浏览  |  Adobe PDF(7767Kb)  |  收藏  |  浏览/下载：363/47  |  提交时间：2022/04/02
Amphorogynaceae  Gene loss  Mistletoe  Pseudogenization  Taxonomy  Santalales  
Plastome phylogenomics of the East Asian endemic genus Dobinea 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 1, 页码: 35-42
作者:  Liu,Changkun;  Yang,Jin;  Jin,Lei;  Wang,Shuying;  Yang,Zhenyan;  Ji,Yunheng
浏览  |  Adobe PDF(3229Kb)  |  收藏  |  浏览/下载：367/150  |  提交时间：2022/04/02
Neo-endemism  Divergence  Dobinea delavayi  Dobinea vulgaris  Dobineeae  Anacardiaceae  QUANTITATIVE RECONSTRUCTION  MOLECULAR PHYLOGENETICS  EVOLUTIONARY HISTORY  CHLOROPLAST GENOME  SAPINDALES  MONSOON  NUCLEAR  CHINA  DIVERSIFICATION  ANACARDIACEAE  
An updated tribal classification of Lamiaceae based on plastome phylogenomics 期刊论文
BMC BIOLOGY, 2021, 卷号: 19, 期号: 1, 页码: 2
作者:  Zhao,Fei;  Chen,Ya-Ping;  Salmaki,Yasaman;  Drew,Bryan T.;  Wilson,Trevor C.;  Scheen,Anne-Cathrine;  Celep,Ferhat;  Braeuchler,Christian;  Bendiksby,Mika;  Wang,Qiang;  Min,Dao-Zhang;  Peng,Hua;  Olmstead,Richard G.;  Li,Bo;  Xiang,Chun-Lei
浏览  |  Adobe PDF(2557Kb)  |  收藏  |  浏览/下载：488/94  |  提交时间：2022/04/02
Lamiaceae  Lamioideae  Mints  Phylogenomics  Tribal relationships  COMPLETE CHLOROPLAST GENOME  HAWAIIAN ENDEMIC MINTS  MOLECULAR PHYLOGENY  POLLEN MORPHOLOGY  CLERODENDRUM LAMIACEAE  LAMIOIDEAE LAMIACEAE  STACHYDEAE LAMIACEAE  CHARACTER EVOLUTION  STAMINAL EVOLUTION  PERICARP STRUCTURE  
Phylogeny and evolution of chloroplast tRNAs in Adoxaceae 期刊论文
ECOLOGY AND EVOLUTION, 2021, 卷号: 11, 期号: 3, 页码: 1294-1309
作者:  Zhong,Qiu-Yi;  Fu,Xiao-Gang;  Zhang,Ting-Ting;  Zhou,Tong;  Yue,Ming;  Liu,Jian-Ni;  Li,Zhong-Hu
浏览  |  Adobe PDF(2392Kb)  |  收藏  |  浏览/下载：267/60  |  提交时间：2022/04/02
anticodon  chloroplast tRNA  intron  phylogeny  transition  transversion  NONOPTIMAL CODON USAGE  HORIZONTAL TRANSFER  GENE DUPLICATION  GENOME  MITOCHONDRIAL  ORIGIN  TRANSLATION  SEQUENCES  ACID  DNA  
Plastome phylogenomics of Cephalotaxus (Cephalotaxaceae) and allied genera 期刊论文
ANNALS OF BOTANY, 2021, 卷号: 127, 期号: 5, 页码: 697-708
作者:  Ji,Yunheng;  Liu,Changkun;  Landis,Jacob B.;  Deng,Min;  Chen,Jiahui
浏览  |  Adobe PDF(2975Kb)  |  收藏  |  浏览/下载：301/83  |  提交时间：2022/04/02
Gymnosperm  Cephalotaxaceae  Taxaceae  phylogeny  molecular dating  taxonomic delineation  recent speciation  QUANTITATIVE RECONSTRUCTION  PHYLOGENETIC-RELATIONSHIPS  EVOLUTIONARY HISTORY  MOLECULAR PHYLOGENY  SOUTHWEST CHINA  TAXACEAE  FLORA  CHLOROPLAST  SEQUENCE  CLIMATE  
Highly degenerate plastomes in two hemiparasitic dwarf mistletoes: Arceuthobium chinense and A. pini (Viscaceae) 期刊论文
PLANTA, 2021, 卷号: 253, 期号: 6, 页码: 125
作者:  Guo,Xiaorong;  Zhang,Guangfei;  Fan,Linyuan;  Liu,Changkun;  Ji,Yunheng
浏览  |  Adobe PDF(6715Kb)  |  收藏  |  浏览/下载：293/73  |  提交时间：2022/04/02
Endophytic habit  Reductive evolution  Rpo genes  rpl33  Gene loss  Santalales  COMPLETE CHLOROPLAST GENOME  PLASTID GENOME  NDH GENES  PHYSIOLOGICAL-ASPECTS  EVOLUTIONARY RATE  DNA BARCODE  LIFE-STYLE  SEQUENCE  ORGANIZATION  LORANTHACEAE  
Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021, 卷号: 163, 页码: 107232
作者:  Yang,Ying-Ying;  Qu,Xiao-Jian;  Zhang,Rong;  Stull,Gregory W.;  Yi,Ting-Shuang
浏览  |  Adobe PDF(2469Kb)  |  收藏  |  浏览/下载：339/74  |  提交时间：2022/04/02
Betulaceae  Juglandaceae  Myricaceae  Quercus  Phylogenetics  Chloroplast capture  RESTRICTION SITE VARIATION  INTERSPECIFIC GENE FLOW  DNA-SEQUENCES  EVOLUTIONARY HISTORY  MOLECULAR PHYLOGENY  CLADISTIC-ANALYSIS  SEED PLANTS  NUCLEAR  BETULACEAE  DIVERSIFICATION