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Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies 期刊论文
PLANT COMMUNICATIONS, 2023, 卷号: 4, 期号: 1, 页码: 100427
作者:  Yin,Xin;  Yang,Danni;  Zhao,Youjie;  Yang,Xingyu;  Zhou,Zhili;  Sun,Xudong;  Kong,Xiangxiang;  Li,Xiong;  Wang,Guangyan;  Duan,Yuanwen;  Yang,Yunqiang;  Yang,Yongping
浏览  |  Adobe PDF(3529Kb)  |  收藏  |  浏览/下载：78/12  |  提交时间：2024/07/17
turnip genome  comparative genomics  pseudogene evolution  GSL biosynthesis  flavor  Brassicaceae lineage -specific polyploidization events (whole  WHOLE-GENOME TRIPLICATION  PHYLOGENETIC ANALYSIS  GLUCOSINOLATE CONTENT  ARABIDOPSIS  IDENTIFICATION  OLERACEA  EXPRESSION  SEQUENCE  ORIGIN  DIVERSIFICATION  
Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin 期刊论文
PEERJ, 2023, 卷号: 11, 页码: e14573
作者:  Shi,Wenbo;  Song,Weicai;  Chen,Zimeng;  Cai,Haohong;  Gong,Qin;  Liu,Jin;  Shi,Chao;  Wang,Shuo
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Phoebe  Chloroplast genome  Comparative analysis  Phylogeny  Phylogeographical origin  Conservation  POLYMORPHISM ANALYSIS  SEQUENCE  DNA  ANNOTATION  REGION  TOOLS  
Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits 期刊论文
NATURE GENETICS, 2023
作者:  Huang,Yue;  He,Jiaxian;  Xu,Yuantao;  Zheng,Weikang;  Wang,Shaohua;  Chen,Peng;  Zeng,Bin;  Yang,Shuizhi;  Jiang,Xiaolin;  Liu,Zishuang;  Wang,Lun;  Wang,Xia;  Liu,Shengjun;  Lu,Zhihao;  Liu,Ziang;  Yu,Huiwen;  Yue,Jianqiang;  Gao,Junyan;  Zhou,Xianyan;  Long,Chunrui;  Zeng,Xiuli;  Guo,Yong-Jie;  Zhang,Wen-Fu;  Xie,Zongzhou;  Li,Chunlong;  Ma,Zhaocheng;  Jiao,Wenbiao;  Zhang,Fei;  Larkin,Robert M.;  Krueger,Robert R.;  Smith,Malcolm W.;  Ming,Ray;  Deng,Xiuxin;  Xu,Qiang
浏览  |  Adobe PDF(12192Kb)  |  收藏  |  浏览/下载：75/24  |  提交时间：2024/07/22
PHYLOGENETIC ANALYSIS  VACUOLAR PH  GENOME  RUTACEAE  ACCURATE  ORIGIN  TOOL  CLASSIFICATION  PROGRAM  RETROTRANSPOSONS  
Multi-omics analysis reveals the evolutionary origin of diterpenoid alkaloid biosynthesis pathways in Aconitum 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2023, 卷号: 65, 期号: 10, 页码: 2320-2335
作者:  Zhao,Dake;  Zhang,Ya;  Ren,Huanxing;  Shi,Yana;  Dong,Ding;  Li,Zonghang;  Cui,Guanghong;  Shen,Yong;  Mou,Zongmin;  Kennelly,Edward J.;  Huang,Luqi;  Ruan,Jue;  Chen,Suiyun;  Yu,Diqiu;  Cun,Yupeng
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Aconitum vilmorinianum  acute toxicity  biosynthetic pathway  diterpenoid alkaloid  evolutionary origin  genome assembly  PHYLOGENETIC ANALYSIS  SUPPLEMENT TREMBL  CANDIDATE GENES  R PACKAGE  TOOL  TRANSCRIPTOME  IDENTIFICATION  RANUNCULACEAE  PREDICTION  DIVERSITY  
Complete chloroplast genomes of four Atalantia (Rutaceae) species: insights into comparative analysis, phylogenetic relationships, and divergence time estimation 期刊论文
PLANT SYSTEMATICS AND EVOLUTION, 2023, 卷号: 309, 期号: 5, 页码: 31
作者:  Shi,Wenbo;  Song,Weicai;  Zhao,Yuqi;  Shi,Chao;  Wang,Shuo
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Atalantia  Chloroplast genome  Comparative analysis  Divergence times  Molecular markers  Phylogeny  ACETYL-COA CARBOXYLASE  CITRUS  SEQUENCE  AURANTIOIDEAE  EVOLUTION  DIVERSITY  FOSSIL  DNA  BIOGEOGRAPHY  RADIATIONS  
Uncovering the first complete chloroplast genomics, comparative analysis, and phylogenetic relationships of the medicinal plants Rhamnus cathartica and Frangula alnus (Rhamnaceae) 期刊论文
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2023, 卷号: 29, 期号: 6, 页码: 855-869
作者:  Shi,Wenbo;  Hu,Siqi;  Song,Weicai;  Huang,Yahui;  Shi,Chao;  Wang,Shuo
浏览  |  Adobe PDF(7970Kb)  |  收藏  |  浏览/下载：98/24  |  提交时间：2024/05/09
Rhamnus  Frangula alnus  Chloroplast genome  Comparative analysis  Divergence  Phylogenetic analysis  PHOTOSYSTEM-II  SEQUENCE  DNA  EVOLUTION  NUCLEAR  ORGANIZATION  POPULATIONS  DIVERSITY  GENES  PSBL  
Characteristics of plastid genomes in the genus Ceratostigma inhabiting arid habitats in China and their phylogenomic implications 期刊论文
BMC PLANT BIOLOGY, 2023, 卷号: 23, 期号: 1, 页码: 303
作者:  Zhao,Yu-Juan;  Liu,Jian;  Yin,Gen-Shen;  Gong,Xun
浏览  |  Adobe PDF(4758Kb)  |  收藏  |  浏览/下载：108/21  |  提交时间：2024/05/09
Ceratostigma  Plastid genome  Comparative analysis  Interspecific relationship  Plumbaginaceae  COMPLETE CHLOROPLAST GENOME  MEKONG-SALWEEN DIVIDE  LIMONIUM-SINENSE  INVERTED REPEAT  SEQUENCE  EVOLUTION  DNA  PLUMBAGINACEAE  CONSEQUENCES  DIVERSITY  
Habitat-related plastome evolution in the mycoheterotrophic Neottia listeroides complex (Orchidaceae, Neottieae) 期刊论文
BMC PLANT BIOLOGY, 2023, 卷号: 23, 期号: 1, 页码: 282
作者:  Shao,Bing-Yi;  Wang,Mo-Zhu;  Chen,Si-Si;  Ya,Ji-Dong;  Jin,Xiao-Hua
浏览  |  Adobe PDF(3432Kb)  |  收藏  |  浏览/下载：69/16  |  提交时间：2024/05/09
Mycoheterotrophy  Neottia listeroides complex  Chloroplast genomes  Micro-evolution  MULTIPLE SEQUENCE ALIGNMENT  SYMBIOTIC GERMINATION  PHYLOGENETIC ANALYSIS  SPECIES ORCHIDACEAE  EPIDENDROIDEAE  GENOME  GASTRODIEAE  REDUCTION  PLANTS  PHOTOSYNTHESIS  
Comparative Analysis and Characterization of Ten Complete Chloroplast Genomes of Eremurus Species (Asphodelaceae) 期刊论文
FORESTS, 2023, 卷号: 14, 期号: 9, 页码: 1709
作者:  Makhmudjanov,Dilmurod;  Abdullaev,Davlatali;  Juramurodov,Inom;  Tuychiev,Shakhzodbek;  Yusupov,Ziyoviddin;  Sun,Hang;  Tojibaev,Komiljon;  Deng,Tao
浏览  |  Adobe PDF(7461Kb)  |  收藏  |  浏览/下载：76/15  |  提交时间：2024/05/09
Eremurus  chloroplast genome  codon usage  comparative analysis  phylogeny  protein-coding genes  MULTIPLE SEQUENCE ALIGNMENT  PHYLOGENETIC ANALYSIS  GENE-EXPRESSION  TRNL-F  SYSTEMATICS  EVOLUTION  INTRON  TOOL  
Comparative Analysis of the Characteristics, Phylogenetic Relationships of the Complete Chloroplast Genome, and Maternal Origin Track of White Poplar Interspecific Hybrid GM107 期刊论文
FORESTS, 2023, 卷号: 14, 期号: 3, 页码: 587
作者:  Guo,Bin;  Chen,Tingting;  Li,Ying;  Li,Shanwen;  Khan,Wasif Ullah;  Zhang,Ren-Gang;  Jia,Kai-Hua;  An,Xinmin
浏览  |  Adobe PDF(5063Kb)  |  收藏  |  浏览/下载：52/15  |  提交时间：2024/05/09
chloroplast genome  phylogenetic analysis  white poplars  transcriptome  DNA  SOFTWARE  SEQUENCE  LIFE