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Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)
Jin, Zhengwei1,2; Xu, Wei3; Liu, Aizhong1,3
Corresponding AuthorLiu,AZ (reprint author),Chinese Acad Sci,Xishuangbanna Trop Bot Garden,Key Lab Trop Forest Ecol,88 Xuefu Rd,Kunming 650223,Peoples R China. ; liuaizhong@mail.kib.ac.cn
2014-02-01
Source PublicationPLANTA
ISSN0032-0935
Volume239Issue:2Pages:299-312
AbstractThe basic leucine zipper (bZIP) transcription factors comprise a family of transcriptional regulators present extensively in plants, involved in regulating diverse biological processes such as flower and vascular development, seed maturation, stress signaling and pathogen defense. Castor bean (Ricinus communis L. Euphorbiaceae) is one of the most important non-edible oilseed crops and its seed oil is broadly used for industrial applications. We performed a comprehensive genome-wide identification and analysis of the bZIP transcription factors that exist in the castor bean genome in this study. In total, 49 RcbZIP transcription factors were identified, characterized and categorized into 11 groups (I-XI) based on their gene structure, DNA-binding sites, conserved motifs, and phylogenetic relationships. The dimerization properties of 49 RcbZIP proteins were predicted on the basis of the characteristic features in the leucine zipper. Global expression profiles of 49 RcbZIP genes among different tissues were examined using high-throughput sequencing of digital gene expression profiles, and resulted in diverse expression patterns that may provide basic information to further reveal the function of the 49 RcbZIP genes in castor bean. The results obtained from this study would provide valuable information in understanding the molecular basis of the RcbZIP transcription factor family and their potential function in regulating the growth and development, particularly in seed filling of castor bean.
KeywordDigital Gene Expression High-throughput Sequencing Phylogenetic Analysis Ricinus Communis Bzip Transcription Factor
Subject AreaPlant Sciences
DOI10.1007/s00425-013-1979-9
Indexed BySCI
Language英语
WOS Research AreaPlant Sciences
WOS SubjectPlant Sciences
WOS IDWOS:000330649600004
Citation statistics
Cited Times:27[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/17985
Collection资源植物与生物技术所级重点实验室
Affiliation1.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Key Lab Trop Forest Ecol, Kunming 650223, Peoples R China
2.Univ Sci & Technol China, Sch Life Sci, Hefei 230027, Peoples R China
3.Chinese Acad Sci, Kunming Inst Bot, Kunming 650204, Peoples R China
Recommended Citation
GB/T 7714
Jin, Zhengwei,Xu, Wei,Liu, Aizhong. Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)[J]. PLANTA,2014,239(2):299-312.
APA Jin, Zhengwei,Xu, Wei,&Liu, Aizhong.(2014).Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.).PLANTA,239(2),299-312.
MLA Jin, Zhengwei,et al."Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)".PLANTA 239.2(2014):299-312.
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