Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)

doi:10.1007/s00425-013-1979-9

	Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)
	Jin, Zhengwei 1,2; Xu, Wei3 ; Liu, Aizhong1,3
通讯作者	Liu,AZ (reprint author),Chinese Acad Sci,Xishuangbanna Trop Bot Garden,Key Lab Trop Forest Ecol,88 Xuefu Rd,Kunming 650223,Peoples R China. ; liuaizhong@mail.kib.ac.cn
	2014-02-01
发表期刊	PLANTA
ISSN	0032-0935
卷号	239 期号:2 页码:299-312
摘要	The basic leucine zipper (bZIP) transcription factors comprise a family of transcriptional regulators present extensively in plants, involved in regulating diverse biological processes such as flower and vascular development, seed maturation, stress signaling and pathogen defense. Castor bean (Ricinus communis L. Euphorbiaceae) is one of the most important non-edible oilseed crops and its seed oil is broadly used for industrial applications. We performed a comprehensive genome-wide identification and analysis of the bZIP transcription factors that exist in the castor bean genome in this study. In total, 49 RcbZIP transcription factors were identified, characterized and categorized into 11 groups (I-XI) based on their gene structure, DNA-binding sites, conserved motifs, and phylogenetic relationships. The dimerization properties of 49 RcbZIP proteins were predicted on the basis of the characteristic features in the leucine zipper. Global expression profiles of 49 RcbZIP genes among different tissues were examined using high-throughput sequencing of digital gene expression profiles, and resulted in diverse expression patterns that may provide basic information to further reveal the function of the 49 RcbZIP genes in castor bean. The results obtained from this study would provide valuable information in understanding the molecular basis of the RcbZIP transcription factor family and their potential function in regulating the growth and development, particularly in seed filling of castor bean.
关键词	Digital Gene Expression High-throughput Sequencing Phylogenetic Analysis Ricinus Communis Bzip Transcription Factor
学科领域	Plant Sciences
DOI	10.1007/s00425-013-1979-9
收录类别	SCI
语种	英语
WOS记录号	WOS:000330649600004
引用统计	被引频次：69[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/17985
专题	资源植物与生物技术所级重点实验室
作者单位	1.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Key Lab Trop Forest Ecol, Kunming 650223, Peoples R China 2.Univ Sci & Technol China, Sch Life Sci, Hefei 230027, Peoples R China 3.Chinese Acad Sci, Kunming Inst Bot, Kunming 650204, Peoples R China
推荐引用方式 GB/T 7714	Jin, Zhengwei,Xu, Wei,Liu, Aizhong. Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)[J]. PLANTA,2014,239(2):299-312.
APA	Jin, Zhengwei,Xu, Wei,&Liu, Aizhong.(2014).Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.).PLANTA,239(2),299-312.
MLA	Jin, Zhengwei,et al."Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)".PLANTA 239.2(2014):299-312.

条目包含的文件		下载所有文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Jin-2014-Genomic sur（780KB）			开放获取	CC BY-NC-SA	浏览下载