Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)
Jin, Zhengwei1,2; Xu, Wei3; Liu, Aizhong1,3
2014-02-01
发表期刊PLANTA
ISSN0032-0935
卷号239期号:2页码:299-312
摘要The basic leucine zipper (bZIP) transcription factors comprise a family of transcriptional regulators present extensively in plants, involved in regulating diverse biological processes such as flower and vascular development, seed maturation, stress signaling and pathogen defense. Castor bean (Ricinus communis L. Euphorbiaceae) is one of the most important non-edible oilseed crops and its seed oil is broadly used for industrial applications. We performed a comprehensive genome-wide identification and analysis of the bZIP transcription factors that exist in the castor bean genome in this study. In total, 49 RcbZIP transcription factors were identified, characterized and categorized into 11 groups (I-XI) based on their gene structure, DNA-binding sites, conserved motifs, and phylogenetic relationships. The dimerization properties of 49 RcbZIP proteins were predicted on the basis of the characteristic features in the leucine zipper. Global expression profiles of 49 RcbZIP genes among different tissues were examined using high-throughput sequencing of digital gene expression profiles, and resulted in diverse expression patterns that may provide basic information to further reveal the function of the 49 RcbZIP genes in castor bean. The results obtained from this study would provide valuable information in understanding the molecular basis of the RcbZIP transcription factor family and their potential function in regulating the growth and development, particularly in seed filling of castor bean.
关键词Digital Gene Expression High-throughput Sequencing Phylogenetic Analysis Ricinus Communis Bzip Transcription Factor
资助信息Chinese Academy of Sciences
学科领域Plant Sciences
DOI10.1007/s00425-013-1979-9
收录类别SCI
语种英语
WOS研究方向Plant Sciences
WOS类目Plant Sciences
WOS记录号WOS:000330649600004
引用统计
被引频次:24[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.kib.ac.cn/handle/151853/17985
专题资源植物与生物技术所级重点实验室
作者单位1.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Key Lab Trop Forest Ecol, Kunming 650223, Peoples R China
2.Univ Sci & Technol China, Sch Life Sci, Hefei 230027, Peoples R China
3.Chinese Acad Sci, Kunming Inst Bot, Kunming 650204, Peoples R China
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Jin, Zhengwei,Xu, Wei,Liu, Aizhong. Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)[J]. PLANTA,2014,239(2):299-312.
APA Jin, Zhengwei,Xu, Wei,&Liu, Aizhong.(2014).Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.).PLANTA,239(2),299-312.
MLA Jin, Zhengwei,et al."Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)".PLANTA 239.2(2014):299-312.
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