Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae)

doi:10.1007/s13562-024-00910-3

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	Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae)
	Hu, Siqi; Shi, Wenbo; Huang, Yahui; Zhang, Zirui; Lin, Qianhui; Shi, Chao
	2024
发表期刊	JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY
ISSN	0971-7811
卷号	33 期号:3 页码:271-287
摘要	Anemone plants (Ranunculaceae) are perennial, low-growing herbs that have a long history of traditional medicinal use. However, the phylogenetic relationship of Anemone species and the comprehensive study of the tribe Anemoneae have not been thoroughly examined due to the lack of available molecular resources. In this study, we conducted a comprehensive sequencing and characterization of the complete chloroplast genomes of Anemone species. These genomes exhibited typical quadripartite structures, ranging in length from 156,659 to 162,991 bp. We also identified several highly divergent intergenic regions (trnQ-UUG-psbK, trnfM-CAU-psbC, trnT-GGU-trnC-GCA, trnG-UCC-trnL-UAA, ndhC-trnM-CAU, psbE-petL, trnW-CCA-rpl33, rps12-trnV-GAC, and trnL-UAG-ndhF) and genes (rps16, ndhD, and ycf1) that could potentially serve as phylogenetic markers. We conducted phylogenetic analyses on 125 species from the tribe Anemoneae using chloroplast genome sequences. We obtained consistent topological structures and strong support for the backbone of phylogenetic relationships by employing maximum likelihood and Bayesian inference methods. Our findings suggest that Hepatica forms a monophyletic group, while Anemone s.l. is paraphyletic, based on the phylogenetic trees. Furthermore, the Hepatica + Anemone clade and the Anemoclema + Clematis clade exhibit a sister relationship. Overall, these results provide valuable genetic resources for the identification and phylogenetic studies of Anemone species.
DOI	10.1007/s13562-024-00910-3
WOS记录号	WOS:001283490400001
引用统计	被引频次：2[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/76125
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Hu, Siqi,Shi, Wenbo,Huang, Yahui,et al. Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae)[J]. JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY,2024,33(3):271-287.
APA	Hu, Siqi,Shi, Wenbo,Huang, Yahui,Zhang, Zirui,Lin, Qianhui,&Shi, Chao.(2024).Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae).JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY,33(3),271-287.
MLA	Hu, Siqi,et al."Comparative analysis of complete chloroplast genomes of five Anemone species and phylogenetic analysis within Tribe Anemoneae (Ranunculaceae)".JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY 33.3(2024):271-287.

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