Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications

doi:10.3389/fpls.2022.832884

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	Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications
	Song, Weicai; Ji, Chuxuan; Chen, Zimeng; Cai, Haohong; Wu, Xiaomeng; Shi, Chao; Wang, Shuo
	2022
发表期刊	FRONTIERS IN PLANT SCIENCE
卷号	13 页码:832884
摘要	Musa (family Musaceae) is monocotyledonous plants in order Zingiberales, which grows in tropical and subtropical regions. It is one of the most important tropical fruit trees in the world. Herein, we used next-generation sequencing technology to assemble and perform in-depth analysis of the chloroplast genome of nine new Musa plants for the first time, including genome structure, GC content, repeat structure, codon usage, nucleotide diversity and etc. The entire length of the Musa chloroplast genome ranged from 167,975 to 172,653 bp, including 113 distinct genes comprising 79 protein-coding genes, 30 transfer RNA (tRNA) genes and four ribosomal RNA (rRNA) genes. In comparative analysis, we found that the contraction and expansion of the inverted repeat (IR) regions resulted in the doubling of the rps19 gene. The several non-coding sites (psbI-atpA, atpH-atpI, rpoB-petN, psbM-psbD, ndhf-rpl32, and ndhG-ndhI) and three genes (ycf1, ycf2, and accD) showed significant variation, indicating that they have the potential of molecular markers. Phylogenetic analysis based on the complete chloroplast genome and coding sequences of 77 protein-coding genes confirmed that Musa can be mainly divided into two groups. These genomic sequences provide molecular foundation for the development and utilization of Musa plants resources. This result may contribute to the understanding of the evolution pattern, phylogenetic relationships as well as classification of Musa plants.
关键词	Musa chloroplast genome genetic structure comparative analysis phylogenetic analysis interspecific relationships BANANA SEQUENCE GENES DNA WASTE ANGIOSPERMS ANNOTATION EVOLUTION REMOVAL PLANTS
DOI	10.3389/fpls.2022.832884
收录类别	SCI
WOS记录号	WOS:000760860800001
引用统计	被引频次：35[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/75631
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Song, Weicai,Ji, Chuxuan,Chen, Zimeng,et al. Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications[J]. FRONTIERS IN PLANT SCIENCE,2022,13:832884.
APA	Song, Weicai.,Ji, Chuxuan.,Chen, Zimeng.,Cai, Haohong.,Wu, Xiaomeng.,...&Wang, Shuo.(2022).Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications.FRONTIERS IN PLANT SCIENCE,13,832884.
MLA	Song, Weicai,et al."Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications".FRONTIERS IN PLANT SCIENCE 13(2022):832884.

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