Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants

doi:10.3389/fpls.2023.1125107

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	Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants
	Tyszka,Alexa S.; Bretz,Eric C.; Robertson,Holly M.; Woodcock-Girard,Miles D.; Ramanauskas,Karolis; Larson,Drew A.; Stull,Gregory W.; Walker,Joseph F.
	2023
发表期刊	FRONTIERS IN PLANT SCIENCE
卷号	14 页码:1125107
摘要	Chloroplasts and mitochondria each contain their own genomes, which have historically been and continue to be important sources of information for inferring the phylogenetic relationships among land plants. The organelles are predominantly inherited from the same parent, and therefore should exhibit phylogenetic concordance. In this study, we examine the mitochondrion and chloroplast genomes of 226 land plants to infer the degree of similarity between the organelles' evolutionary histories. Our results show largely concordant topologies are inferred between the organelles, aside from four well-supported conflicting relationships that warrant further investigation. Despite broad patterns of topological concordance, our findings suggest that the chloroplast and mitochondrial genomes evolved with significant differences in molecular evolution. The differences result in the genes from the chloroplast and the mitochondrion preferentially clustering with other genes from their respective organelles by a program that automates selection of evolutionary model partitions for sequence alignments. Further investigation showed that changes in compositional heterogeneity are not always uniform across divergences in the land plant tree of life. These results indicate that although the chloroplast and mitochondrial genomes have coexisted for over 1 billion years, phylogenetically, they are still evolving sufficiently independently to warrant separate models of evolution. As genome sequencing becomes more accessible, research into these organelles' evolution will continue revealing insight into the ancient cellular events that shaped not only their history, but the history of plants as a whole.
关键词	phylogenetics plastome mitochondrial genome chloroplast genome phylogenomics combinability phylogenetic conflict MITOCHONDRIAL GENOMES PENALIZED LIKELIHOOD NUCLEOTIDE-SEQUENCES EXTANT GYMNOSPERMS DYNAMIC EVOLUTION CHLOROPLAST DNA SEED PLANTS GENE RATES RECOMBINATION
学科领域	Plant Sciences
DOI	10.3389/fpls.2023.1125107
WOS记录号	WOS:000967713100001
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/74975
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Tyszka,Alexa S.,Bretz,Eric C.,Robertson,Holly M.,et al. Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants[J]. FRONTIERS IN PLANT SCIENCE,2023,14:1125107.
APA	Tyszka,Alexa S..,Bretz,Eric C..,Robertson,Holly M..,Woodcock-Girard,Miles D..,Ramanauskas,Karolis.,...&Walker,Joseph F..(2023).Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants.FRONTIERS IN PLANT SCIENCE,14,1125107.
MLA	Tyszka,Alexa S.,et al."Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants".FRONTIERS IN PLANT SCIENCE 14(2023):1125107.

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10.3389_fpls.2023.11（854KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览请求全文