Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis
Ye, Linjiang1,2,3; Fu, Chaonan2,3; Wang, Yuehua1; Liu, Jie2; Gao, Lianming2
2018
Source PublicationMITOCHONDRIAL DNA PART B-RESOURCES
ISSN2380-2359
Volume3Issue:2Pages:492-493
Abstract

Carya kweichowensis is an importantly economic tree species in Juglandaceae, which is critically endangered and endemic to Guizhou, China. The plastid genome of C. kweichowensis was assembled and characterized based on Illumina pair-end sequencing data using genome skimming approach. The complete plastid genome is 175,313 bp in length, with a GC content of 35.8%. It is a typical quadripartite structure, containing a large single copy (LSC) region of 89,858 bp and a small single copy (SSC) region of 3569bp separated by a pair of extremely extensive inverted repeats (IRs) of 40,943 bp. A total of 142 genes were annotated, including 94 protein-coding genes, 40 tRNA genes, and eight rRNA genes. A maximum likelihood (ML) phylogenetic tree on plastid genomes revealed that C. kweichowensis is close to Annamocarya sinensis. The newly characterized complete plastid genome of C. kweichowensis will provide essential data for further studies of this endangered species.

KeywordCarya Kweichowensis Conservation Genetics Endangered Species Genome Skimming Plastid Genome
DOI10.1080/23802359.2018.1464414
Language英语
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000445298500012
Citation statistics
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/62556
Collection中国科学院东亚植物多样性与生物地理学重点实验室
Corresponding AuthorLiu, Jie; Gao, Lianming
Affiliation1.Yunnan Univ, Sch Life Sci, Kunming, Yunnan, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
3.Univ Chinese Acad Sci, Beijing, Peoples R China
Recommended Citation
GB/T 7714
Ye, Linjiang,Fu, Chaonan,Wang, Yuehua,et al. Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2018,3(2):492-493.
APA Ye, Linjiang,Fu, Chaonan,Wang, Yuehua,Liu, Jie,&Gao, Lianming.(2018).Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis.MITOCHONDRIAL DNA PART B-RESOURCES,3(2),492-493.
MLA Ye, Linjiang,et al."Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis".MITOCHONDRIAL DNA PART B-RESOURCES 3.2(2018):492-493.
Files in This Item:
File Name/Size DocType Version Access License
2018-Ye-Mitochondria(702KB)期刊论文作者接受稿开放获取CC BY-NC-SAView Download
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Ye, Linjiang]'s Articles
[Fu, Chaonan]'s Articles
[Wang, Yuehua]'s Articles
Baidu academic
Similar articles in Baidu academic
[Ye, Linjiang]'s Articles
[Fu, Chaonan]'s Articles
[Wang, Yuehua]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Ye, Linjiang]'s Articles
[Fu, Chaonan]'s Articles
[Wang, Yuehua]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: 2018-Ye-Mitochondrial DNA Part B-Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis.pdf
Format: Adobe PDF
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.