Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis
Ye, Linjiang1,2,3; Fu, Chaonan2,3; Wang, Yuehua1; Liu, Jie2; Gao, Lianming2
2018
发表期刊MITOCHONDRIAL DNA PART B-RESOURCES
ISSN2380-2359
卷号3期号:2页码:492-493
摘要Carya kweichowensis is an importantly economic tree species in Juglandaceae, which is critically endangered and endemic to Guizhou, China. The plastid genome of C. kweichowensis was assembled and characterized based on Illumina pair-end sequencing data using genome skimming approach. The complete plastid genome is 175,313 bp in length, with a GC content of 35.8%. It is a typical quadripartite structure, containing a large single copy (LSC) region of 89,858 bp and a small single copy (SSC) region of 3569bp separated by a pair of extremely extensive inverted repeats (IRs) of 40,943 bp. A total of 142 genes were annotated, including 94 protein-coding genes, 40 tRNA genes, and eight rRNA genes. A maximum likelihood (ML) phylogenetic tree on plastid genomes revealed that C. kweichowensis is close to Annamocarya sinensis. The newly characterized complete plastid genome of C. kweichowensis will provide essential data for further studies of this endangered species.
关键词Carya kweichowensis conservation genetics endangered species genome skimming plastid genome
资助信息National Natural Science Foundation of China; Large-Scale Scientific Facilities of the Chinese Academy of Sciences; Science and Technology Innovation Program of Forestry Department of Yunnan Province; National Academy of Science Alliance Biodiversity Branch; Natural Science Foundation of Yunnan
语种英语
资助项目National Natural Science Foundation of China[31770367] ; Large-Scale Scientific Facilities of the Chinese Academy of Sciences[2017-LSF-GBOWS-02] ; Science and Technology Innovation Program of Forestry Department of Yunnan Province[[2016]cx03] ; National Academy of Science Alliance Biodiversity Branch[Y62C0111Q1] ; Natural Science Foundation of Yunnan[2017FB027]
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文献类型期刊论文
条目标识符http://ir.kib.ac.cn/handle/151853/62556
专题中国科学院东亚植物多样性与生物地理学重点实验室
通讯作者Liu, Jie; Gao, Lianming
作者单位1.Yunnan Univ, Sch Life Sci, Kunming, Yunnan, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
3.Univ Chinese Acad Sci, Beijing, Peoples R China
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Ye, Linjiang,Fu, Chaonan,Wang, Yuehua,et al. Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2018,3(2):492-493.
APA Ye, Linjiang,Fu, Chaonan,Wang, Yuehua,Liu, Jie,&Gao, Lianming.(2018).Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis.MITOCHONDRIAL DNA PART B-RESOURCES,3(2),492-493.
MLA Ye, Linjiang,et al."Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis".MITOCHONDRIAL DNA PART B-RESOURCES 3.2(2018):492-493.
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