Characterization of the complete chloroplast genome of Dalbergia odorifera (Leguminosae), a rare and critically endangered legume endemic to China
Wariss, Hafiz Muhammad1,2,3; Yi, Ting-Shuang2; Wang, Hong1; Zhang, Rong2,3
2018-09-01
Source PublicationCONSERVATION GENETICS RESOURCES
ISSN1877-7252
Volume10Issue:3Pages:527-530
Abstract

Dalbergia odorifera is a critically endangered tree species with high economic and medicinal value. In this study, its chloroplast genome was characterized using next generation Illumina pair-end sequencing dataset. The chloroplast genome has a quadripartite structure with 156,064 bp in length and contains a pair of 25,702 bp inverted repeat (IR) regions, which were separated by the large single copy (LSC: 85,805 bp) region and small single copy (SSC: 18,856 bp) region. The plastid genome harbors 111 unique genes, including 77 protein-coding genes (PCGs), 30 tRNAs and 4 rRNAs. The overall GC content of the whole genome was 36.1%. The Phylogenetic analysis showed a close relationship between D. odorifera and Arachis hypogaea species of Dalbergieae in our sampled species. The complete chloroplast genome provides fundamental information for genetic and conservation studies of D. odorifera.

KeywordDalbergia Odorifera Endangered Species Plastome Phylogenetic Analysis
DOI10.1007/s12686-017-0866-2
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Cited Times:3[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/61688
Collection中国科学院东亚植物多样性与生物地理学重点实验室
Affiliation1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming, Yunnan, Peoples R China
3.Univ Chinese Acad Sci, Beijing, Peoples R China
Recommended Citation
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Wariss, Hafiz Muhammad,Yi, Ting-Shuang,Wang, Hong,et al. Characterization of the complete chloroplast genome of Dalbergia odorifera (Leguminosae), a rare and critically endangered legume endemic to China[J]. CONSERVATION GENETICS RESOURCES,2018,10(3):527-530.
APA Wariss, Hafiz Muhammad,Yi, Ting-Shuang,Wang, Hong,&Zhang, Rong.(2018).Characterization of the complete chloroplast genome of Dalbergia odorifera (Leguminosae), a rare and critically endangered legume endemic to China.CONSERVATION GENETICS RESOURCES,10(3),527-530.
MLA Wariss, Hafiz Muhammad,et al."Characterization of the complete chloroplast genome of Dalbergia odorifera (Leguminosae), a rare and critically endangered legume endemic to China".CONSERVATION GENETICS RESOURCES 10.3(2018):527-530.
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