Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)

doi:10.1007/s12686-017-0741-1

	Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)
	Chen, Si-Yun 2; Zhang, Xian-Zhi1
	2017-12-01
发表期刊	CONSERVATION GENETICS RESOURCES
ISSN	1877-7252
卷号	9 期号:4 页码:623-626
摘要	Hippophae rhamnoides is an ecologically and economically important tree in arid areas, but its natural distribution is now very fragmented and contracted. Here we assembled and characterized its whole chloroplast (cp) genome based on Illumina pair-end sequencing data. The H. rhamnoides cp genome was 156,132 bp in size, containing a large single copy region (LSC) of 83,970 bp and a small single copy region (SSC) of 18,831 bp separated by a pair of inverted repeats (IRs) of 26,658 bp. The genome had 132 genes, including 86 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Most of genes occurred as single-copy, while 18 gene species had two copies. The overall GC content of this genome was 36.7%, with the corresponding values of LSC, SSC and IR regions being 34.5, 30.3 and 42.4%, respectively. Further, the phylogenomic analysis strongly supported the sister relationship of H. rhamnoides and Elaeagnus in Elaeagnaceae.
关键词	Hippophae Rhamnoides Chloroplast Genome Phylogenomics
DOI	10.1007/s12686-017-0741-1
语种	英语
WOS记录号	WOS:000415188400024
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/60625
专题	植物化学与西部植物资源持续利用国家重点实验室
作者单位	1.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Chen, Si-Yun,Zhang, Xian-Zhi. Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)[J]. CONSERVATION GENETICS RESOURCES,2017,9(4):623-626.
APA	Chen, Si-Yun,&Zhang, Xian-Zhi.(2017).Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.).CONSERVATION GENETICS RESOURCES,9(4),623-626.
MLA	Chen, Si-Yun,et al."Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)".CONSERVATION GENETICS RESOURCES 9.4(2017):623-626.

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