Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)
Chen, Si-Yun2; Zhang, Xian-Zhi1
2017-12-01
Source PublicationCONSERVATION GENETICS RESOURCES
ISSN1877-7252
Volume9Issue:4Pages:623-626
AbstractHippophae rhamnoides is an ecologically and economically important tree in arid areas, but its natural distribution is now very fragmented and contracted. Here we assembled and characterized its whole chloroplast (cp) genome based on Illumina pair-end sequencing data. The H. rhamnoides cp genome was 156,132 bp in size, containing a large single copy region (LSC) of 83,970 bp and a small single copy region (SSC) of 18,831 bp separated by a pair of inverted repeats (IRs) of 26,658 bp. The genome had 132 genes, including 86 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Most of genes occurred as single-copy, while 18 gene species had two copies. The overall GC content of this genome was 36.7%, with the corresponding values of LSC, SSC and IR regions being 34.5, 30.3 and 42.4%, respectively. Further, the phylogenomic analysis strongly supported the sister relationship of H. rhamnoides and Elaeagnus in Elaeagnaceae.
KeywordHippophae Rhamnoides Chloroplast Genome Phylogenomics
DOI10.1007/s12686-017-0741-1
Language英语
WOS IDWOS:000415188400024
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Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/60625
Collection植物化学与西部植物资源持续利用国家重点实验室
Affiliation1.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China
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Chen, Si-Yun,Zhang, Xian-Zhi. Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)[J]. CONSERVATION GENETICS RESOURCES,2017,9(4):623-626.
APA Chen, Si-Yun,&Zhang, Xian-Zhi.(2017).Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.).CONSERVATION GENETICS RESOURCES,9(4),623-626.
MLA Chen, Si-Yun,et al."Characterization of the complete chloroplast genome of seabuckthorn (Hippophae rhamnoides L.)".CONSERVATION GENETICS RESOURCES 9.4(2017):623-626.
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