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Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree
Chen, Si-Yun2; Zhang, Xian-Zhi1
2017-12-01
Source PublicationCONSERVATION GENETICS RESOURCES
ISSN1877-7252
Volume9Issue:4Pages:595-598
AbstractXanthoceras sorbifolium is an important biodiesel tree in northern China, but its natural population is now very fragmented and in decline. Here we assembled and characterized the complete chloroplast (cp) genome of X. sorbifolium using Illumina pair-end sequencing data. The X. sorbifolium cp genome was 161,231 bp in size, containing a large single copy region (LSC) of 85,299 bp and a small single copy region (SSC) of 18,692 bp separated by a pair of inverted repeats (IRs) of 28,620 bp. The genome had 132 genes, including 86 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the X. sorbifolium cp genome was 37.7%, with the corresponding values of LSC, SSC and IR regions being 36.0, 31.7 and 42.3%, respectively. The phylogenomic analysis strongly supported that X. sorbifolium diverged firstly in Sapindaceae. This complete cp genome will be useful for further studies of this endangered plant.
KeywordXanthoceras Sorbifolium Chloroplast Genome Phylogenomics Conservation
DOI10.1007/s12686-017-0732-2
Language英语
WOS IDWOS:000415188400018
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Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/60623
Collection中国西南野生生物种质资源库
Affiliation1.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China
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Chen, Si-Yun,Zhang, Xian-Zhi. Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree[J]. CONSERVATION GENETICS RESOURCES,2017,9(4):595-598.
APA Chen, Si-Yun,&Zhang, Xian-Zhi.(2017).Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree.CONSERVATION GENETICS RESOURCES,9(4),595-598.
MLA Chen, Si-Yun,et al."Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree".CONSERVATION GENETICS RESOURCES 9.4(2017):595-598.
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