Hyde,KD (reprint author),Chinese Acad Sci,Kunming Inst Bot,Key Lab Plant Divers & Biogeog East Asia,Kunming 650201,Peoples R China.
Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry. They are also part of the natural ecosystem and may play a role in regulating plant numbers/density. Morphological identification and analysis of plant pathogenic fungi, while important, is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi. Molecular (DNA sequence) data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies, although hampered in part by non-standard laboratory practices and analytical methods. To facilitate current and future research, this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, Basidiomycota, Mucormycotina (Fungi), and Oomycota, using recent molecular data, up-to-date names, and the latest taxonomic insights. Lineage-specific laboratory protocols together with advice on their application, as well as general observations, are also provided. We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge. Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort. Bipolaris, Botryosphaeriaceae, Botryosphaeria, Botrytis, Choanephora, Colletotrichum, Curvularia, Diaporthe, Diplodia, Dothiorella, Fusarium, Gilbertella, Lasiodiplodia, Mucor, Neofusicoccum, Pestalotiopsis, Phyllosticta, Phytophthora, Puccinia, Pyrenophora, Pythium, Rhizopus, Stagonosporopsis, Ustilago and Verticillium are dealt with in this paper.
1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Peoples R China 2.World Agroforestry Ctr, Kunming 650201, Peoples R China 3.Mae Fah Luang Univ, Inst Excellence Fungal Res, Chiang Rai 57100, Thailand 4.Mae Fah Luang Univ, Sch Sci, Chiang Rai 57100, Thailand 5.King Saud Univ, Coll Sci, Dept Bot & Microbiol, Riyadh 1145, Saudi Arabia 6.Univ Gothenburg, Dept Biol & Environm Sci, S-40530 Gothenburg, Sweden 7.Univ Malaya, Inst Postgrad Studies Bldg, Inst Ocean & Earth Sci IOES, Kuala Lumpur 50603, Malaysia 8.Franklin & Marshall Coll, Dept Biol, Lancaster, PA 17604 USA 9.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China 10.CBS KNAW Fungal Biodivers Ctr, NL-3584 CT Utrecht, Netherlands 11.Beijing Acad Agr & Forestry Sci, Inst Plant & Environm Protect, Beijing 100097, Peoples R China 12.Univ Warsaw, Fac Biol, Dept Plant Systemat & Geog, PL-00478 Warsaw, Poland 13.TU Kaiserslautern, Dept Biol, D-67663 Kaiserslautern, Germany 14.Wageningen Univ, Lab Phytopathol, NL-6708 PB Wageningen, Netherlands 15.Agr & Agri Food Canada, Cent Expt Farm, Ottawa, ON, Canada 16.Royal Bot Gardens & Domain Trust, Sydney, NSW 2000, Australia 17.ARS, USDA, Salinas, CA USA 18.Landcare Res, Auckland 92170, New Zealand 19.Univ Melbourne, Fac Vet & Agr Sci, Parkville, Vic 3010, Australia 20.Dept Agr Fisheries & Forestry, Dutton Pk, Qld 4102, Australia 21.Univ Putra Malaysia, Fac Forestry, Dept Forest Management, Serdang 43400, Malaysia 22.Jena Microbial Resource Collect, Hans Knoll Inst, Leibniz Inst Nat Prod Res & Infect Biol, Jena, Germany 23.Univ Jena, Dept Microbiol & Mol Biol, Inst Microbiol, Jena, Germany 24.Univ Warsaw, Interfac Interdisciplinary Doctoral Studies Nat S, Warsaw, Poland
Hyde,Kevin D.;Nilsson,R. Henrik;Alias,S. Aisyah;Ariyawansa,Hiran A.;Blair,Jaime E.;Cai,Lei;de Cock,Arthur W. A. M.;Dissanayake,Asha J.;Glockling,Sally L.;Goonasekara,Ishani D.;Gorczak,Michal;Hahn,Matthias;Jayawardena,Ruvishika S.;van Kan,Jan A. L.;Laurence,Matthew H.;Levesque,C. Andre;Li,Xinghong;Liu,Jian-Kui;Maharachchikumbura,Sajeewa S. N.;Manamgoda,Dimuthu S.;Martin,Frank N.;McKenzie,Eric H. C.;McTaggart,Alistair R.;Mortimer,Peter E.;Nair,Prakash V. R.;Pawlowska,Julia;Rintoul,Tara L.;Shivas,Roger G.;Spies,Christoffel F. J.;Summerell,Brett A.;Taylor,Paul W. J.;Terhem,Razak B.;Udayanga,Dhanushka;Vaghefi,Niloofar;Walther,Grit;Wilk,Mateusz;Wrzosek,Marta;Xu,Jian-Chu;Yan,JiYe;Zhou,Nan.One stop shop: backbones trees for important phytopathogenic genera: I (2014),FUNGAL DIVERSITY,2014,():