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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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GST,p < 0.001) and low levels of seed-based gene flow. C. debaoensis (Cycadaceae) is an endangered species restricted to the border of Guangxi and Yunnan province in southwest China. This species has been classified into two types: sand and karst, according to the soil matrix they grow on. We examined chloroplast sequence variation of the cpDNA sequences from 11 populations of this species. Significant population genetic differentiation was detected (GST= 0.684 and FST = 0.74160). There was marked genetic differentiation between populations in the sand and karst regions and no expansion was detected. Climate changes during glacial periods have had significant effects on the current distribution of cycads. The molecular phylogenetic data, together with the geographic distribution of the haplotypes, suggest that C. debaoensis experienced range contraction during glacial periods, and that the current populations are still confined to the original refugia in southwest China which have favorable habitats in glacial period. These results imply that small refugia were maintained in both sand and karst regions during the LGM (last glacial maximum). This species had no postglacial recolonization and only stayed in these refugia up to now. The low within-population diversity of C. debaoensis suggests that there were strong bottleneck events or founder effects within each separate region during the Quaternary climatic oscillations. Relatively high genetic and haplotype diversities were detected in the newly discovered populations, which located at intermediate locality of sand regions and had morphological variation; this is probably the consequence of the admixture of different haplotypes colonizing the area from separate sources. C. micholitzii occurs in the Annan Highlands in central Vietnam near the Laos border. C. bifida occurs in North Vietnam; its distribution extends across the border into adjacent localities in Guangxi and Yunnan in China. For the comparability between them,theywere considered as the same species C. micholitzii by many academicians. The cpDNA sequences from 11 populations showed that these very controversial species, C. micholitzii and C. bifida, is paraphyletic and should belong to the same species C. micholitzii. AMOVA analysis showed that the component of among-population within region/species (76.46%) was unexpectedly larger than the among-species/region component (14.97%), which also indicates that there is no justification for recognizing two species as C. micholitzii and C. bifida. This hypothesis was also supported by the geological data, especially the neotectonic history of the indo-china block, which started to move south since Oligocene and cause the geographic isolation of these two groups. Therefore, the most likely explanation to the phenotypic similarities between these two groups may be the retention of ancestral polymorphisms in the paraphyletic group due to incomplete lineage sorting. Furthermore, the similarities may also be ascribed to pollen-mediated gene flow among geographically proximate populations and/or phenotypic convergence under similar selection schemes in the same region. C.micholitzi had the higest genetic diversity (HT = 0.980,) and genetic differentiation (GST = 0.830, NST = 0.915) among the C. micholitzii complex. The high genetic diversity might be attributed to its long evolutionary history, highly diverse habitats. The ineffective mode of seed dispersal and dramatic neotectonic movement in the distribution range of this species could result in the high genetic differentiation. 2. Phylogeographic analysis based on nuclear ribosomal sequences, We sequenced the nrDNA ITS in all 27 populations sampled, 7 haplotypes were identified, among which C. micholitzii had 6, while C. multipinnata, C. longipetiolula and C. debaoensis shared the remaining one. Compared to chloroplast genes, nuclear genes had higher correlation between genetic and geographical distance, but lower interspecies differentiation (54.42% vs 25.24%). Phylogeographical structure of C. micholitzii and C.bifida based on ITS Variation was consistent with the morphology differentiation. This similar in nuclear gene should be ascribed to pollen-mediated gene flow among geographically proximate populations.Long-distance gene flow over the two groups was clearly interrupted, which brought on the nrDNA genetic differenciation between the geographically isolated groups, to a certain extent affected the morphological variation. 3. Interspecies relationships among Cycas micholitzii complex, We analysed chloroplast sequence variation of the atpB-rbcL and psbA-trnH intergenic spacers in 27 populations sampled of C. micholitzii complex, AMOVA analysis showed that the component of among-species/region component (59.21%). However, phylogenic analysis showed that the haplotypes of C. micholitzii complex couldn`t grouped into four clusters closely corresponding to the narrowly defined C. micholitzi, C. multipinnata, C. debaoensis and C. longipetiolula. We concluded that the conflict may result from several factors: firstly incomplete lineage sorting of C. micholitzii; secondly hybridization/introgression of sympatrically cycads, which would be supported by evidence base on nrDNA ITS sequences; thirdly intramolecular recombination in cpDNA of cycads; eventually the neotectonic movement in the distribution range of this 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Fungal Biodiversity Profiles 71-80
期刊论文
CRYPTOGAMIE MYCOLOGIE, 2018, 卷号: 39, 期号: 4, 页码: 419-445
Authors:
Wang, Xiang-Hua
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Submit date：2019/03/18
Russulales
Its
Lactarius
Phylogeny
Southern China
Subg. Russularia
Taxonomy
Fungal Biodiversity Profiles 61-70
期刊论文
CRYPTOGAMIE MYCOLOGIE, 2018, 卷号: 39, 期号: 4, 页码: 381-418
Authors:
Das, Kanad
;
Rossi, Walter
;
Leonardi, Marco
;
Ghosh, Aniket
;
Bera, Ishika
;
Hembrom, Manoj E.
;
Bajpai, Rajesh
;
Joseph, Siljo
;
Nayaka, Sanjeeva
;
Upreti, Dalip Kumar
;
Wang, Xiang-Hua
;
Hofstetter, Valerie
;
Buyck, Bart
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Submit date：2019/03/18
Lichenized Ascomycota
Arthoniales
Cantharellales
Epitypification
Its
Laboulbeniales
Multifurca
Phylogeny
Russula
Russulales
Taxonomy
Evolutionary history and biogeography of Mandragora L. (Solanaceae)
期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 129, 期号: 1, 页码: 85-95
Authors:
Volis, Sergei
;
Fogel, Keren
;
Tu, Tieyao
;
Sun, Hang
;
Zaretsky, Marianna
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Submit date：2018/11/12
Mandragora
Phylogeny
Biogeography
Plastid Dna
Its
Human-assisted Migration
Solms-laubachia tianbaoshanensis (Brassicaceae), a new species from NW Yunnan, China
期刊论文
PHYTOTAXA, 2018, 卷号: 379, 期号: 1, 页码: 39-48
Authors:
Chen, Hongliang
;
Al-Shehbaz, Ihsan A.
;
Yue, Jipei
;
Sun, Hang
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Submit date：2018/12/27
Solms-laubachia
Cruciferae
Molecular Phylogeny
Morphology
Phylogeny, biogeography and taxonomic re-assessment of Multifurca (Russulaceae, Russulales) using three-locus data
期刊论文
PLOS ONE, 2018, 卷号: 13, 期号: 11, 页码: 33
Authors:
Wang, Xiang-Hua
;
Hailing, Roy E.
;
Hofstetter, Valerie
;
Lebel, Teresa
;
Buyck, Bart
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The genus Heimioporus in China
期刊论文
MYCOLOGIA, 2018, 卷号: 110, 期号: 6, 页码: 1110-1126
Authors:
Zeng, Nian-Kai
;
Chai, Hui
;
Liang, Zhi-Qun
;
Tang, Li-Ping
;
Xue, Rou
;
Yang, Zhu L.
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Boletes
Revision
Systematics
Taxonomy
2 New Taxa
Diversity and taxonomy of Tricholoma species from Yunnan, China, and notes on species from Europe and North America
期刊论文
MYCOLOGIA, 2018, 卷号: 110, 期号: 6, 页码: 1081-1109
Authors:
Reschke, Kai
;
Popa, Flavius
;
Yang, Zhu L.
;
Kost, Gerhard
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Agaricales
Biogeography
Distribution
Gerhardtia
Holarctic
Phylogeny
Tibet
Tricholomataceae
7 New Taxa
Taxonomic circumscription of Diaporthales based on multigene phylogeny and morphology
期刊论文
FUNGAL DIVERSITY, 2018, 卷号: 93, 期号: 1, 页码: 241-443
Authors:
Senanayake, Indunil C.
;
Jeewon, Rajesh
;
Chomnunti, Putarak
;
Wanasinghe, Dhanushka N.
;
Norphanphoun, Chada
;
Karunarathna, Anuruddha
;
Pem, Dhandevi
;
Perera, Rekhani H.
;
Camporesi, Erio
;
McKenzie, Eric H. C.
;
Hyde, Kevin D.
;
Karunarathna, Samantha C.
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Authentic Specimens
Dendrostoma Leiphaemia
Incertae Sedis
Classification
Taxonomy
Families
Accepted Genera
Thailand's amazing diversity: up to 96% of fungi in northern Thailand may be novel
期刊论文
FUNGAL DIVERSITY, 2018, 卷号: 93, 期号: 1, 页码: 215-239
Authors:
Hyde, Kevin D.
;
Norphanphoun, Chada
;
Chen, Jie
;
Dissanayake, Asha J.
;
Doilom, Mingkwan
;
Hongsanan, Sinang
;
Jayawardena, Ruvishika S.
;
Jeewon, Rajesh
;
Perera, Rekhani H.
;
Thongbai, Benjarong
;
Wanasinghe, Dhanushka N.
;
Wisitrassameewong, Komsit
;
Tibpromma, Saowaluck
;
Stadler, Marc
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Submit date：2019/01/22
Agaricus
Amanita
Colletotrichum
Cornus
Fungal Diversity
Pandanaceae
Rosaceae
Rosa
Teak Fungi
Fungal diversity notes 840-928: micro-fungi 4associated with Pandanaceae
期刊论文
FUNGAL DIVERSITY, 2018, 卷号: 93, 期号: 1, 页码: 1-160
Authors:
Tibpromma, Saowaluck
;
Hyde, Kevin D.
;
McKenzie, Eric H. C.
;
Bhat, D. Jayarama
;
Phillips, Alan J. L.
;
Wanasinghe, Dhanushka N.
;
Samarakoon, Milan C.
;
Jayawardena, Ruvishika S.
;
Dissanayake, Asha J.
;
Tennakoon, Danushka S.
;
Doilom, Mingkwan
;
Phookamsak, Rungtiwa
;
Tang, Alvin M. C.
;
Xu, Jianchu
;
Mortimer, Peter E.
;
Promputtha, Itthayakorn
;
Maharachchikumbura, Sajeewa S. N.
;
Khan, Samiullah
;
Karunarathna, Samantha C.
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Submit date：2018/12/27
65 New Taxa
Ascomycota
Dothideomycetes
Freycinetia
Lecanoromycetes
Leotiomycetes
Pandanus
Saprobic
Sordariomycetes
